Browse Element(s) Details


OsAffx.16503.1.S1_at

Description tigr:9635.m03049
TID=OsAffx.16503.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3115011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31110Os.52671.1.S1_at8/117+18406243..18412376transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31110Os.14491.2.S1_x_at4/117+18406243..18412376transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31110Os.47463.1.S1_x_at4/117+18406243..18412376transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31130Os.52899.1.S1_at11/117+18414610..18418724Protein kinase domain containing protein, expressed
LOC_Os07g31140Os.8147.1.S1_a_at2/117+18426212..184295853-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative
LOC_Os07g31150OsAffx.16503.1.S1_at11/117+18434258..18435116hypothetical protein
LOC_Os07g31160NANA7+18437461..18441582hypothetical protein
LOC_Os07g31170OsAffx.20387.1.S1_x_at2/117+18442196..18448292retrotransposon protein, putative, unclassified
LOC_Os07g31190OsAffx.28689.1.S1_at11/117+18451961..18460762expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16503.1.S1_at--107--7791Chr07:18435004..18435028 (25 bp)
GGTCCTCTCCAAAATACCTCAAGAT
LOC_Os07g31150
OsAffx.16503.1.S1_at--448--2811Chr07:18434984..18435008 (25 bp)
AAGATTTCCCAATATTCGTCCACCG
LOC_Os07g31150
OsAffx.16503.1.S1_at--644--8051Chr07:18434960..18434984 (25 bp)
GGAGATGGAGATTGCCTTCGTCTTC
LOC_Os07g31150
OsAffx.16503.1.S1_at--873--4251Chr07:18434893..18434917 (25 bp)
CCGGTGAGCATCCTTTTGATTTCTA
LOC_Os07g31150
OsAffx.16503.1.S1_at--130--2471Chr07:18434827..18434851 (25 bp)
AACAAGCCATCTCTGTTTGTCTGAG
LOC_Os07g31150
OsAffx.16503.1.S1_at--1155--2071Chr07:18434780..18434804 (25 bp)
ACATTTACCGCAAAGGCCAGTCTGA
LOC_Os07g31150
OsAffx.16503.1.S1_at--34--10852Chr07:18434749..18434773 (25 bp)
TTGTGTGGCCGGTCAGACAGGACAA
LOC_Os07g31150
OsAffx.16503.1.S1_at--414--3331Chr07:18434722..18434746 (25 bp)
CACTGCGGTCAGACCATGTGTCTAA
LOC_Os07g31150
OsAffx.16503.1.S1_at--938--8151Chr07:18434444..18434468 (25 bp)
GGAAAGCTTGCCCTTCGACGACTGC
LOC_Os07g31150
OsAffx.16503.1.S1_at--283--2851Chr07:18434355..18434379 (25 bp)
AAGTCATCCGGCATCGCTCCGAGAT
LOC_Os07g31150
OsAffx.16503.1.S1_at--581--5391Chr07:18434310..18434334 (25 bp)
GAAGCAGTCTTCCTAGGAGCCATTT
LOC_Os07g31150
Target Sequence 
GGTCCTCTCCAAAATACCTCAAGATTTCCCAATATTCGTCCACCGGAGATGGAGATTGCCTTCGTCTTCTCCAACTCCGG
CTAAATGCCGCCGTGGCCGATTCCTTCCTCTCCGGTGAGCATCCTTTTGATTTCTATGATCCTAGAGACATACATGCATG
GCAGATAGTTGAAGGAAAACAAGCCATCTCTGTTTGTCTGAGAAGGTGTGTCACCGTTGGGAGGACATTTACCGCAAAGG
CCAGTCTGACCGCCATTGTGTGGCCGGTCAGACAGGACAATACACTGCGGTCAGACCATGTGTCTAAGGCTGAATTAGCT
ATATGGAGGAGAAAGAGCCGAGCCACCCCTCAAATAGGGGAAAGCTTGCCCTTCGACGACTGCCCCAGAGGCGACAAGTT
CGCCCAGATCACCCTCCTTGACAAACAACTTGCCCAAGAAGCTGGACAAGTCATCCGGCATCGCTCCGAGATCGGGCCCG
GTTGTCGCGGCCGAAGCAGTCTTCCTAGGAGCCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis