Browse Element(s) Details


Os.52899.1.S1_at

Description gb:AK069794.1
DB_XREF= gi:32979818
TID=Os.52899.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030D14, full insert sequence.
FL= gb:AK069794.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3113011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31070OsAffx.28688.1.S1_at11/117+18392051..18397365expressed protein
LOC_Os07g31080NANA7+18400897..18401694transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31090OsAffx.20823.2.S1_x_at1/117+18403411..18403887retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g31100NANA7+18404732..18405753transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31110Os.52671.1.S1_at8/117+18406243..18412376transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31110Os.14491.2.S1_x_at4/117+18406243..18412376transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31110Os.47463.1.S1_x_at4/117+18406243..18412376transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31130Os.52899.1.S1_at11/117+18414610..18418724Protein kinase domain containing protein, expressed
LOC_Os07g31140Os.8147.1.S1_a_at2/117+18426212..184295853-oxo-5-alpha-steroid 4-dehydrogenase family protein, putative
LOC_Os07g31150OsAffx.16503.1.S1_at11/117+18434258..18435116hypothetical protein
LOC_Os07g31160NANA7+18437461..18441582hypothetical protein
LOC_Os07g31170OsAffx.20387.1.S1_x_at2/117+18442196..18448292retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52899.1.S1_at--689--9871Chr07:18418144..18418168 (25 bp)
TACTGTTTCGGTCTTGTTCTCCTAA
LOC_Os07g31130
Os.52899.1.S1_at--403--8731Chr07:18418190..18418214 (25 bp)
TGTCACTGCAAGAGGCGGATACCGT
LOC_Os07g31130
Os.52899.1.S1_at--192--4691Chr07:18418204..18418228 (25 bp)
GCGGATACCGTGTTTGAGCAGCTCT
LOC_Os07g31130
Os.52899.1.S1_at--863--5931Chr07:18418219..18418243 (25 bp)
GAGCAGCTCTGGGACATTGGACCGC
LOC_Os07g31130
Os.52899.1.S1_at--45--3531Chr07:18418246..18418270 (25 bp)
CATGATGTGAATTCCGAGCCTGAGA
LOC_Os07g31130
Os.52899.1.S1_at--453--951Chr07:18418289..18418313 (25 bp)
AGGAAGCCATCCTTAGATGCCGTCA
LOC_Os07g31130
Os.52899.1.S1_at--369--6351Chr07:18418304..18418328 (25 bp)
GATGCCGTCATCTTGAGGAGGTTAA
LOC_Os07g31130
Os.52899.1.S1_at--808--2771Chr07:18418327..18418351 (25 bp)
AAGAGCCTGGTTTCACGGTGTCTGA
LOC_Os07g31130
Os.52899.1.S1_at--566--3451Chr07:18418496..18418520 (25 bp)
CAGTCGTACATGGTTCTTCTTTGAG
LOC_Os07g31130
Os.52899.1.S1_at--1007--10251Chr07:18418648..18418672 (25 bp)
TTTGTCATGTTGATTCTCGTGGCGC
LOC_Os07g31130
Os.52899.1.S1_at--1059--8391Chr07:18418668..18418692 (25 bp)
GGCGCTGCTGCCATATAATGTTGAT
LOC_Os07g31130
Target Sequence 
TACTGTTTCGGTCTTGTTCTCCTAACGCTCTTCACATGGAAGAAGGTGTCACTGCAAGAGGCGGATACCGTGTTTGAGCA
GCTCTGGGACATTGGACCGCCACATGATGTGAATTCCGAGCCTGAGAAACCTGGGCAACAGCTCAAGGAAGCCATCCTTA
GATGCCGTCATCTTGAGGAGGTTAAGAGCCTGGTTTCACGGTGTCTGACGTCCGAGGTGACGAAGAGACCATCCATGGTG
GAAGTAGCAAAACATCTCAAGAACATAAATGATTTACATGATAGCACAGCTTGCCATGAGCTGGCGATTTATCAATCTCG
AATGCTTTCGGGCTAGGCTAGGCTGCAAGTAGCAGTCGTACATGGTTCTTCTTTGAGTAAATTAAGGTGCCGTAGTAGAT
GCTATAATGCAAGCGCCAAGCAACATATTACATATGTGTATTTTATATCCCGACAAAGAANAAAAGACNTGTGTATTGCA
TATATTTTGTAACAGCAACGGATGTTTGTCATGTTGATTCTCGTGGCGCTGCTGCCATATAATGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis