Browse Element(s) Details


OsAffx.28688.1.S1_at

Description tigr:9635.m03042
TID=OsAffx.28688.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3107011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31020OsAffx.16501.1.S1_at11/117+18369099..18371046hypothetical protein
LOC_Os07g31030OsAffx.16502.1.S1_at11/117+18372801..18374033hypothetical protein
LOC_Os07g31040NANA7+18378560..18380977retrotransposon protein, putative, unclassified
LOC_Os07g31050NANA7+18381962..18385354retrotransposon protein, putative, unclassified
LOC_Os07g31060NANA7+18386256..18389547retrotransposon protein, putative, unclassified
LOC_Os07g31070OsAffx.28688.1.S1_at11/117+18392051..18397365expressed protein
LOC_Os07g31080NANA7+18400897..18401694transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31090OsAffx.20823.2.S1_x_at1/117+18403411..18403887retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g31100NANA7+18404732..18405753transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31110Os.52671.1.S1_at8/117+18406243..18412376transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31110Os.14491.2.S1_x_at4/117+18406243..18412376transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31110Os.47463.1.S1_x_at4/117+18406243..18412376transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g31130Os.52899.1.S1_at11/117+18414610..18418724Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28688.1.S1_at--1029--3011Chr07:18396786..18396810 (25 bp)
AATGCTGGGCATTGTGTCCGTACTT
LOC_Os07g31070
OsAffx.28688.1.S1_at--231--2171Chr07:18396886..18396910 (25 bp)
ACACCACTGCTTGCTGGGAGCTATG
LOC_Os07g31070
OsAffx.28688.1.S1_at--868--8931Chr07:18396915..18396939 (25 bp)
TGACGCCTTCATTTTATCTGACACG
LOC_Os07g31070
OsAffx.28688.1.S1_at--959--1831Chr07:18396937..18396961 (25 bp)
ACGCTGGCATTCATTTGCTCGTGTA
LOC_Os07g31070
OsAffx.28688.1.S1_at--382--2971Chr07:18396999..18397023 (25 bp)
AATGGACATCTCTATACGCTGCAGG
LOC_Os07g31070
OsAffx.28688.1.S1_at--787--5371Chr07:18397061..18397085 (25 bp)
GAAGAAGCTTTGTGGTCGCCTTCGC
LOC_Os07g31070
OsAffx.28688.1.S1_at--293--5731Chr07:18397131..18397155 (25 bp)
GACTGCGGTCTGTGTGATTATCTTT
LOC_Os07g31070
OsAffx.28688.1.S1_at--607--8831Chr07:18397145..18397169 (25 bp)
TGATTATCTTTGTGTCTTCGCTCTA
LOC_Os07g31070
OsAffx.28688.1.S1_at--770--8491Chr07:18397186..18397210 (25 bp)
TGGCAGATCCTTCGTGTCGCAGACA
LOC_Os07g31070
OsAffx.28688.1.S1_at--1129--4991Chr07:18397246..18397270 (25 bp)
GCATGGACTTTAGGACTCACGTTCT
LOC_Os07g31070
OsAffx.28688.1.S1_at--613--10531Chr07:18397309..18397333 (25 bp)
TTCATTATAATCTTTGGCCTCCCAG
LOC_Os07g31070
Target Sequence 
AATGCTGGGCATTGTGTCCGTACTTGTCGCGACCGTGACATTCGCGTCAGCATTCACGTTGCCCGGAGGTTACCAAACCG
GGTCGGATAACGCGGCAGGCACACCACTGCTTGCTGGGAGCTATGCCTTTGACGCCTTCATTTTATCTGACACGCTGGCA
TTCATTTGCTCGTGTATGGCGACCTTCAGCCTGATCTTCGCTGGGGTCCCTGCAATGGACATCTCTATACGCTGCAGGTA
CTTCGAAATTTCTGCCCTCTTGCTGCGGAGTTCGGGAAGAAGCTTTGTGGTCGCCTTCGCGTTGGGGCTATACCTGGTGC
TGGCTCCAGTTGCTCACACGATCGCGACTGCGGTCTGTGTGATTATCTTTGTGTCTTCGCTCTACGGGAATTCGGAAGCC
TGGCAGATCCTTCGTGTCGCAGACATGGCCCGTGCTAGATTGGGAACTCGAATGCATGTAGCATGGACTTTAGGACTCAC
GTTCTATAACGTCTTTGTTAATTTGTTTTTGAACTTCTGGTCCTTCATTATAATCTTTGGCCTCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis