Browse Element(s) Details


Os.47708.1.A1_at

Description gb:CB649444
DB_XREF= gi:29644437
DB_XREF=OSJNEb13F22.r
CLONE=OSJNEb13F22
TID=Os.47708.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47708 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T49220 (A.thaliana) T49220 regulatory subunit of protein kinase CK2 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3128011/11Casein kinase II beta-4 subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31240NANA7+18489093..18493475retrotransposon protein, putative, unclassified
LOC_Os07g31250Os.35935.2.S1_at11/117+18496568..18501005Protein kinase domain containing protein, expressed
LOC_Os07g31260Os.10451.2.S1_at11/117+18501793..18505457expressed protein
LOC_Os07g31270Os.49873.1.S1_at11/117+18508310..18513451expressed protein
LOC_Os07g31280Os.18100.1.S1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed
LOC_Os07g31280Os.47708.1.A1_at11/117+18517697..18521925Casein kinase II beta-4 subunit, putative, expressed
LOC_Os07g31290OsAffx.16505.2.S1_x_at11/117+18526814..18530103Protein kinase APK1B, chloroplast precursor, putative
LOC_Os07g31300Os.5814.1.S1_at11/117+18530853..18533386ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os07g31310Os.44002.1.S1_at11/117+18536271..18539583expressed protein
LOC_Os07g31320Os.25527.1.S1_at11/117+18544075..18545159expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007623biological_processcircadian rhythm
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005956cellular_componentprotein kinase CK2 complex
GO:0008134molecular_functiontranscription factor binding
GO:0008605molecular_functionprotein kinase CK2 regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47708.1.A1_at--881--91Chr07:18521015..18521039 (25 bp)
ATTCAGTAATCTTTAACGCATGGTC
LOC_Os07g31280
Os.47708.1.A1_at--59--2611Chr07:18521029..18521053 (25 bp)
AACGCATGGTCTTTTGCTTTCTTAG
LOC_Os07g31280
Os.47708.1.A1_at--905--7811Chr07:18521036..18521060 (25 bp)
GGTCTTTTGCTTTCTTAGTGTTCTC
LOC_Os07g31280
Os.47708.1.A1_at--417--4891Chr07:18521044..18521068 (25 bp)
GCTTTCTTAGTGTTCTCAGTGCCAA
LOC_Os07g31280
Os.47708.1.A1_at--450--3671Chr07:18521049..18521073 (25 bp)
CTTAGTGTTCTCAGTGCCAATATAT
LOC_Os07g31280
Os.47708.1.A1_at--408--10191Chr07:18521073..18521097 (25 bp)
TATTATCGCTTATTAGATGAAGTCC
LOC_Os07g31280
Os.47708.1.A1_at--328--5331Chr07:18521091..18521115 (25 bp)
GAAGTCCACACACTCTCATCTGTGT
LOC_Os07g31280
Os.47708.1.A1_at--1032--3311Chr07:18521101..18521125 (25 bp)
CACTCTCATCTGTGTTACATTGATA
LOC_Os07g31280
Os.47708.1.A1_at--599--6771Chr07:18521131..18521155 (25 bp)
GTTACATAGAACTGCCATTTTGTTG
LOC_Os07g31280
Os.47708.1.A1_at--1008--10551Chr07:18521171..18521195 (25 bp)
TTCTTGACCATGTTCAGACATCGAC
LOC_Os07g31280
Os.47708.1.A1_at--124--4331Chr07:18521178..18521202 (25 bp)
CCATGTTCAGACATCGACGGCGCAT
LOC_Os07g31280
Target Sequence 
ATTCAGTAATCTTTAACGCATGGTCTTTTGCTTTCTTAGTGTTCTCAGTGCCAATATATATTATCGCTTATTAGATGAAG
TCCACACACTCTCATCTGTGTTACATTGATATCATAGTTACATAGAACTGCCATTTTGTTGTTATATTCTGCTGTTTTCT
TGACCATGTTCAGACATCGACGGCGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47708.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis