Browse Element(s) Details

Os.10905.1.S1_x_at

Description

gb:AK103233.1
DB_XREF= gi:32988442
TID=Os.10905.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10905 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc-finger helicase (P0005E02.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123E13, full insert sequence.
FL= gb:AK103233.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g31450	11/11	SNF2 family N-terminal domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g31400	Os.43995.1.S1_at	10/11	7	+	18598084..18601712	transposon protein, putative, unclassified, expressed
LOC_Os07g31410	OsAffx.28696.1.S1_x_at	11/11	7	+	18604453..18605088	expressed protein
LOC_Os07g31420	Os.15715.1.S1_at	11/11	7	+	18608658..18612756	transposon protein, putative, unclassified, expressed
LOC_Os07g31430	Os.37746.1.S1_at	9/11	7	+	18616597..18617943	phosphate-responsive 1 family protein, putative, expressed
LOC_Os07g31440	Os.10927.1.S1_x_at	11/11	7	+	18619688..18623049	expressed protein
LOC_Os07g31440	Os.10927.2.S1_at	10/11	7	+	18619688..18623049	expressed protein
LOC_Os07g31450	Os.10905.1.S1_x_at	11/11	7	+	18624091..18637639	SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450	OsAffx.10855.1.S1_at	2/11	7	+	18624091..18637639	SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31450	Os.10905.2.S1_at	1/11	7	+	18624091..18637639	SNF2 family N-terminal domain containing protein, expressed
LOC_Os07g31460	Os.27566.1.S1_s_at	11/11	7	+	18641388..18651889	Transglutaminase-like superfamily protein, expressed
LOC_Os07g31470	OsAffx.28697.1.S1_at	11/11	7	+	18657061..18658623	Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006333	biological_process	chromatin assembly or disassembly
GO:0008283	biological_process	cell proliferation
GO:0009739	biological_process	response to gibberellic acid stimulus
GO:0016481	biological_process	negative regulation of transcription
GO:0016568	biological_process	chromatin modification
GO:0048364	biological_process	root development
GO:0003677	molecular_function	DNA binding
GO:0003678	molecular_function	DNA helicase activity
GO:0003682	molecular_function	chromatin binding
GO:0004386	molecular_function	helicase activity
GO:0005524	molecular_function	ATP binding
GO:0008094	molecular_function	DNA-dependent ATPase activity
GO:0016887	molecular_function	ATPase activity
GO:0030528	molecular_function	transcription regulator activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10905.1.S1_x_at--307--267	1	Chr07:18635063..18635086 (24 bp)	AAGCGTGCACCACCTGGAAATTGGC	LOC_Os07g31450
Os.10905.1.S1_x_at--303--823	1	Chr07:18635041..18635065 (25 bp)	GGCAATGCCCAAGATGTCGTACAAA	LOC_Os07g31450
Os.10905.1.S1_x_at--769--223	1	Chr07:18634993..18635017 (25 bp)	ACAATGCTGATGCTGACACCTCTAA	LOC_Os07g31450
Os.10905.1.S1_x_at--273--915	1	Chr07:18634948..18634972 (25 bp)	TGCGCACAAGCACCACATCAGATAG	LOC_Os07g31450
Os.10905.1.S1_x_at--51--329	1	Chr07:18634902..18634926 (25 bp)	CAAAGCCTCTTTTAACACATCACGT	LOC_Os07g31450
Os.10905.1.S1_x_at--1162--217	1	Chr07:18634888..18634912 (25 bp)	ACACATCACGTGGTGCTGCATTTAG	LOC_Os07g31450
Os.10905.1.S1_x_at--817--537	1	Chr07:18634689..18634713 (25 bp)	GAAGAAACATCTGCATCCCATGGAA	LOC_Os07g31450
Os.10905.1.S1_x_at--613--813	1	Chr07:18634569..18634593 (25 bp)	GGACAGTGATTCTTCAATGGAACCA	LOC_Os07g31450
Os.10905.1.S1_x_at--454--297	1	Chr07:18634554..18634578 (25 bp)	AATGGAACCATCTACTTCTCTTGAG	LOC_Os07g31450
Os.10905.1.S1_x_at--1093--1057	1	Chr07:18634539..18634563 (25 bp)	TTCTCTTGAGCACAGCGAATCGCCG	LOC_Os07g31450
Os.10905.1.S1_x_at--867--851	1	Chr07:18634491..18634515 (25 bp)	TGGAAGAACACCTGCATCAAGTACC	LOC_Os07g31450

Target Sequence

AAGCGTGCACCACCTGGAAATTGGCAATGCCCAAGATGTCGTACAAAAAAAGTTAGCTTGAAGCTCTTAGACAATGCTGA
TGCTGACACCTCTAAACGTGAAAGAACAAGGAGAATGCGCACAAGCACCACATCAGATAGCCCATCCCCATCTCCACAAA
ACAAAGCCTCTTTTAACACATCACGTGGTGCTGCATTTAGGGATGATGAACCAGGTGCAAAAGACAATGAAGTTGAGAAA
AGGAAACCATTGATATTACATTTGAAGAAGCGTTCAACCAAGGAACTATCTACAGATACCACATCATCAAAGTCAGGGTT
ACTTGGAAAGTCTTCAGAAGAGAAACAGGAGAAACACGGAAGTGCTTTGAAAGTGAAGAAACATCTGCATCCCATGGAAT
TATCTCCAAAGAAATATAAGAACAAGAAGCAACACAATCACAGAGACAGTAAGAGATCCGAAGCAAAAAAGGTCCAATAT
TTGGCATCAGATGTGGACAGTGATTCTTCAATGGAACCATCTACTTCTCTTGAGCACAGCGAATCGCCGCCCCCAAAAAG
AAAATCGTTGGATGGAAGAACACCTGCATCAAGTACC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis