Browse Element(s) Details


Os.26354.2.S1_x_at

Description gb:AK072589.1
DB_XREF= gi:32982612
TID=Os.26354.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 5, At5g42220 (OJ1197_D06.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132F22, full insert sequence.
FL= gb:AK072589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3154010/11Ubiquitin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31500Os.11234.1.S1_x_at11/117+18686698..18690611Leucine Rich Repeat family protein, expressed
LOC_Os07g31500Os.11234.1.S1_at11/117+18686698..18690611Leucine Rich Repeat family protein, expressed
LOC_Os07g31510NANA7+18693323..18694310hypothetical protein
LOC_Os07g31519NANA7+18709193..18709585NA
LOC_Os07g31530OsAffx.1383.1.S1_at11/117+18712239..18715219retrotransposon protein, putative, unclassified
LOC_Os07g31540Os.26354.1.S1_a_at11/117+18715340..18723960Ubiquitin family protein, expressed
LOC_Os07g31540Os.26354.2.S1_x_at10/117+18715340..18723960Ubiquitin family protein, expressed
LOC_Os07g31550Os.53555.1.S1_at11/117+18726294..18731858expressed protein
LOC_Os07g31560OsAffx.28701.2.S1_at11/117+18738691..18739715hypothetical protein
LOC_Os07g31570NANA7+18741704..18742150hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26354.2.S1_x_at--284--7431Chr07:18718221..18718245 (25 bp)
GTGTTATCCTGCCTGTTCAAGTGAG
LOC_Os07g31540
Os.26354.2.S1_x_at--1161--6811Chr07:18718165..18718189 (25 bp)
GTTTCTCAAGGTTCTCAGACTGCAG
LOC_Os07g31540
Os.26354.2.S1_x_at--260--9051Chr07:18718145..18718169 (25 bp)
TGCAGTGGGCGGTGGATCTCAACCA
LOC_Os07g31540
Os.26354.2.S1_x_at--413--3251Chr07:18718120..18718144 (25 bp)
CAAGCCTCTGTAGGTGGTGTTGCTA
LOC_Os07g31540
Os.26354.2.S1_x_at--850--7411Chr07:18718104..18718128 (25 bp)
GTGTTGCTAGCATTCCTTCTATAGT
LOC_Os07g31540
Os.26354.2.S1_x_at--1079--3471Chr07:18718027..18718051 (25 bp)
CAGGTTTCATCATCTGCGCAGAACA
LOC_Os07g31540
Os.26354.2.S1_x_at--237--471Chr07:18717989..18718013 (25 bp)
ATCTCGCTCGGTCACAACTAATGGA
LOC_Os07g31540
Os.26354.2.S1_x_at--900--651Chr07:18717879..18717903 (25 bp)
ATGCACAATCTCTTGTAGCTGGAGC
LOC_Os07g31540
Os.26354.2.S1_x_at--1131--7851Chr07:18717756..18717780 (25 bp)
GGTATTTCTCCTTCAAACACATCTG
LOC_Os07g31540
Os.26354.2.S1_x_at--851--5071NONE
GCAGCGCTGAAAATGCTCCCAACAT
NONE
Os.26354.2.S1_x_at--1010--6191Chr07:18717618..18717642 (25 bp)
GAGGAATCAACAACAGCCAACTTAG
LOC_Os07g31540
Target Sequence 
GTGTTATCCTGCCTGTTCAAGTGAGGAGTCAAGTAGCAATGCCTAATCAATCAACAGTTTCTCAAGGTTCTCAGACTGCA
GTGGGCGGTGGATCTCAACCACAAGCCTCTGTAGGTGGTGTTGCTAGCATTCCTTCTATAGTGGCACAGGTAACTGCACA
AGTAGCCAATGCATTGAGTGCAAATCAACAAGGCCAGGTTTCATCATCTGCGCAGAACACAGTAGATCAGGGATCTCGCT
CGGTCACAACTAATGGAGTTGACAATGTGGATTCTCTGGTATCAGCAAGTACGCAACTGCAAAATGAGCTGTCAGATTCT
AACAATGGACGCACTTCACTAAATGCACAATCTCTTGTAGCTGGAGCAGGTATTTCTCCTTCAAACACATCTGATCCCAA
TTTAGCATCGGAAGACAGCAGCGCTGAAAATGCTCCCAACATCGGCAGTATTCAACAACATCCAGAGATGGAAGGGATCC
ATGCAGATGATGTCAGAAAACCTTCTGAGGAATCAACAACAGCCAACTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26354.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis