Browse Element(s) Details


OsAffx.28701.2.S1_at

Description tigr:9635.m03094
TID=OsAffx.28701.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3156011/11hypothetical protein
LOC_Os07g317101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31530OsAffx.1383.1.S1_at11/117+18712239..18715219retrotransposon protein, putative, unclassified
LOC_Os07g31540Os.26354.1.S1_a_at11/117+18715340..18723960Ubiquitin family protein, expressed
LOC_Os07g31540Os.26354.2.S1_x_at10/117+18715340..18723960Ubiquitin family protein, expressed
LOC_Os07g31550Os.53555.1.S1_at11/117+18726294..18731858expressed protein
LOC_Os07g31560OsAffx.28701.2.S1_at11/117+18738691..18739715hypothetical protein
LOC_Os07g31570NANA7+18741704..18742150hypothetical protein
LOC_Os07g31590NANA7+18753563..18757440retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g31600Os.18191.2.S1_at1/117+18759606..18760064hypothetical protein
LOC_Os07g31610Os.55785.1.S1_at11/117+18763979..18765446Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28701.2.S1_at--167--9331Chr07:18739235..18739259 (25 bp)
TCGCCATCATGACCGACCACTATAA
LOC_Os07g31560
OsAffx.28701.2.S1_at--785--371Chr07:18739230..18739254 (25 bp)
ATCATGACCGACCACTATAACTTCC
LOC_Os07g31560
OsAffx.28701.2.S1_at--998--2012Chr07:18829538..18829562 (25 bp)
ACTATAACTTCCCTTTGATCCTGTG
LOC_Os07g31710
OsAffx.28701.2.S1_at--3--5111Chr07:18738933..18738957 (25 bp)
GCACGAGAGGATGACGGTGACGCAT
LOC_Os07g31560
OsAffx.28701.2.S1_at--445--6091Chr07:18738888..18738912 (25 bp)
GAGTACTCCTCCCTCAATGATGAGG
LOC_Os07g31560
OsAffx.28701.2.S1_at--652--6311Chr07:18738765..18738789 (25 bp)
GATGACATCGACGACGTTGGCCAGC
LOC_Os07g31560
OsAffx.28701.2.S1_at--285--531Chr07:18738759..18738783 (25 bp)
ATCGACGACGTTGGCCAGCAGTGGT
LOC_Os07g31560
OsAffx.28701.2.S1_at--1047--1871Chr07:18738752..18738776 (25 bp)
ACGTTGGCCAGCAGTGGTGCCCCAC
LOC_Os07g31560
OsAffx.28701.2.S1_at--1160--7491Chr07:18738739..18738763 (25 bp)
GTGGTGCCCCACTTGGGAGCATAGA
LOC_Os07g31560
OsAffx.28701.2.S1_at--475--4511Chr07:18738734..18738758 (25 bp)
GCCCCACTTGGGAGCATAGAAAGTT
LOC_Os07g31560
OsAffx.28701.2.S1_at--290--7631Chr07:18738725..18738749 (25 bp)
GGGAGCATAGAAAGTTTGAGCAATT
LOC_Os07g31560
Target Sequence 
TCGCCATCATGACCGACCACTATAACTTCCCTTTGATCCTGTGCCGGCCAGGGAAGGGCACCTGGACGCCCGACTCATGC
ACGATGCCATTCGTCCGCGTCATCGATATTGCCTTCTTCAAGGACAAGCTCTATCTAATTACAACAGCCGAGGACCTCTT
CGCTGTCGACCTCGCCGCCGATGAACACGGCAAGCCCACCGTCACCAACGTCGAGCGCATCATCAGACAACCGAGAAGCC
CCGATGGCATGATCGACGCATTTAGGTGGAGTGACGACGAAGACGACGACGACGACGGCGACGCACGAGAGGATGACGGT
GACGCATCGTCGACCAATGACGACGGGGAGTACTCCTCCCTCAATGATGAGGGGGTAGTAGATGGTGAGGACCATGACGA
GGTATTGAACCAAGAGGGTGGAGACAACAACAGCGACGGCGACGGCGAAATTGAGCCCGTCACTGATGACGATGACATCG
ACGACGTTGGCCAGCAGTGGTGCCCCACTTGGGAGCATAGAAAGTTTGAGCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28701.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis