Browse Element(s) Details


Os.8318.1.S1_at

Description gb:CR283598
DB_XREF= gi:44670164
DB_XREF=CR283598
CLONE=p551c10p3
TID=Os.8318.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.8318 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chromo domain protein putative nitrate reductase (OSJNBa0093I09.2), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1777011/11chromdomain-containing protein CRD101, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17740Os.25573.1.S1_a_at11/1110+8648945..8653679expressed protein
LOC_Os10g17750OsAffx.20542.1.S1_at11/1110+8654131..8655125hypothetical protein
LOC_Os10g17759NANA10+8657285..8657471NA
LOC_Os10g17770Os.8318.1.S1_at11/1110+8661053..8665765chromdomain-containing protein CRD101, putative, expressed
LOC_Os10g17780OsAffx.6685.1.S1_at11/1110+8666361..8667728oxidoreductase, FAD-binding family protein, expressed
LOC_Os10g17790Os.46589.1.S1_at9/1110+8669367..8671434Remorin, C-terminal region family protein, expressed
LOC_Os10g17800OsAffx.18275.1.S1_x_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17800OsAffx.18275.1.S1_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17810OsAffx.18276.1.S1_at9/1110+8677144..8680054hypothetical protein
LOC_Os10g17810Os.31929.3.S1_x_at2/1110+8677144..8680054hypothetical protein
LOC_Os10g17820Os.27691.1.S1_x_at1/1110+8682754..8688484retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009648biological_processphotoperiodism
GO:0009825biological_processmultidimensional cell growth
GO:0009910biological_processnegative regulation of flower development
GO:0010016biological_processshoot morphogenesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8318.1.S1_at--816--2651Chr10:8664770..8664794 (25 bp)
AAGCCAGTGCGATTTGCAGCAGCTG
LOC_Os10g17770
Os.8318.1.S1_at--49--9771Chr10:8665212..8665316 (25 bp)
TAATCCCTTGCTGCTTATTAGCTAC
LOC_Os10g17770
Os.8318.1.S1_at--338--10451Chr10:8665309..8665333 (25 bp)
TTAGCTACTACGAGCAGTGCCTTCG
LOC_Os10g17770
Os.8318.1.S1_at--231--5471Chr10:8665367..8665391 (25 bp)
GAACTGGGTTTAGCTGCCTGTGTAT
LOC_Os10g17770
Os.8318.1.S1_at--910--7171Chr10:8665446..8665470 (25 bp)
GTCTGGTCTTGCAGTAGGTTGCTAA
LOC_Os10g17770
Os.8318.1.S1_at--138--8771Chr10:8665481..8665505 (25 bp)
TGTATTGCTTGGTCTCCCCACTGAT
LOC_Os10g17770
Os.8318.1.S1_at--244--1971Chr10:8665500..8665524 (25 bp)
ACTGATTGCTTATTCGCGCCATCTT
LOC_Os10g17770
Os.8318.1.S1_at--764--91Chr10:8665511..8665535 (25 bp)
ATTCGCGCCATCTTATGTGTAACAT
LOC_Os10g17770
Os.8318.1.S1_at--323--1771Chr10:8665621..8665645 (25 bp)
ACCTGCATGCATCTTTTCTCTATGT
LOC_Os10g17770
Os.8318.1.S1_at--475--5831Chr10:8665667..8665691 (25 bp)
GACCTGCATGCATCATAGACGGTAA
LOC_Os10g17770
Os.8318.1.S1_at--510--5971Chr10:8665697..8665721 (25 bp)
GAGAAGCTCGTGAATTTCGTGTGAT
LOC_Os10g17770
Target Sequence 
AAGCCAGTGCGATTTGCAGCAGCTGTGAACNACGATGTGCAGCAAGTTTCANTTACATTCAAANGCACTCAGGTCTGATG
GNCAGGAANTCATGGTGGACGACAAAGAATTGAAAGCNAATAATCCCTTGCTGCTTATTAGCTACTACGAGCAGTGCCTT
CGTTATAATCCNGACTTCGTGAGAGATGAACTNAAGGAACTGGGTTTAGCTGCCTGTGTATTTAATTAGCATTTGTGTGT
TTAGAAGCTTGTAGCTCTATGGGCTTGATAATTTAGTCTGGTCTTGCAGTAGGTTGCTAAATGCAAGAAATGTATTGCTT
GGTCTCCCCACTGATTGCTTATTCGCGCCATCTTATGTGTAACATTTTGAACAGTGGGGAGATATGTGTAATCTATGCTT
AGGGATCTTATGTTTCTTTTCTCTATGTTTAGTTATTTGGGATCGTCGTGACCTGCATGCATCTTTTCTCTATGTTTAGT
TATTTGGGATCGTCGTGACCTGCATGCATCATAGACGGTAATNACTGAGAAGCTCGTGAATTTCGTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis