Browse Element(s) Details


OsAffx.6685.1.S1_at

Description tigr:9638.m01472
TID=OsAffx.6685.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, FAD-binding, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1778011/11oxidoreductase, FAD-binding family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17740Os.25573.1.S1_a_at11/1110+8648945..8653679expressed protein
LOC_Os10g17750OsAffx.20542.1.S1_at11/1110+8654131..8655125hypothetical protein
LOC_Os10g17759NANA10+8657285..8657471NA
LOC_Os10g17770Os.8318.1.S1_at11/1110+8661053..8665765chromdomain-containing protein CRD101, putative, expressed
LOC_Os10g17780OsAffx.6685.1.S1_at11/1110+8666361..8667728oxidoreductase, FAD-binding family protein, expressed
LOC_Os10g17790Os.46589.1.S1_at9/1110+8669367..8671434Remorin, C-terminal region family protein, expressed
LOC_Os10g17800OsAffx.18275.1.S1_x_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17800OsAffx.18275.1.S1_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17810OsAffx.18276.1.S1_at9/1110+8677144..8680054hypothetical protein
LOC_Os10g17810Os.31929.3.S1_x_at2/1110+8677144..8680054hypothetical protein
LOC_Os10g17820Os.27691.1.S1_x_at1/1110+8682754..8688484retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0042128biological_processnitrate assimilation
GO:0005829cellular_componentcytosol
GO:0008134molecular_functiontranscription factor binding
GO:0008940molecular_functionnitrate reductase activity
GO:0009703molecular_functionnitrate reductase (NADH) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6685.1.S1_at--947--5291Chr10:8667178..8667202 (25 bp)
GAAGGAACGGCAACACAATCTCAAC
LOC_Os10g17780
OsAffx.6685.1.S1_at--487--2231Chr10:8667192..8667216 (25 bp)
ACAATCTCAACGGTGGTCCAATCGG
LOC_Os10g17780
OsAffx.6685.1.S1_at--764--3251Chr10:8667199..8667223 (25 bp)
CAACGGTGGTCCAATCGGTCTTGAT
LOC_Os10g17780
OsAffx.6685.1.S1_at--758--3051Chr10:8667211..8667235 (25 bp)
AATCGGTCTTGATCTCGCGGCAGCG
LOC_Os10g17780
OsAffx.6685.1.S1_at--187--5791Chr10:8667241..8667265 (25 bp)
GACGAACATGCCGAGGCACACGGCG
LOC_Os10g17780
OsAffx.6685.1.S1_at--454--3311Chr10:8667257..8667281 (25 bp)
CACACGGCGCAATCAGTTGCGCGGA
LOC_Os10g17780
OsAffx.6685.1.S1_at--928--3811Chr10:8667301..8667325 (25 bp)
CTCCAGTTCTGCGTGTGGATCGAGT
LOC_Os10g17780
OsAffx.6685.1.S1_at--1055--10591Chr10:8667307..8667331 (25 bp)
TTCTGCGTGTGGATCGAGTCGGCTC
LOC_Os10g17780
OsAffx.6685.1.S1_at--18--9231Chr10:8667384..8667408 (25 bp)
TCCTTCTTCGTAGGGAGGGCGACGA
LOC_Os10g17780
OsAffx.6685.1.S1_at--795--4171Chr10:8667527..8667551 (25 bp)
CGCCACGGCTTCCATGACGGAGACG
LOC_Os10g17780
OsAffx.6685.1.S1_at--329--10671Chr10:8667536..8667560 (25 bp)
TTCCATGACGGAGACGCCACTGAAG
LOC_Os10g17780
Target Sequence 
GAAGGAACGGCAACACAATCTCAACGGTGGTCCAATCGGTCTTGATCTCGCGGCAGCGGCGGCGACGAACATGCCGAGGC
ACACGGCGCAATCAGTTGCGCGGAGGCAGCGGCGTCCTCCTCCCTCCAGTTCTGCGTGTGGATCGAGTCGGCTCGACGGC
GGCACGCGGCTGCAGCGGCGACTGGCGAGGGGAAGAGGAAGGGGCCTCCTTCTTCGTAGGGAGGGCGACGATGGCGGCCT
CCATCTCCCCCGTCGTCATCTCCATAGGCAGGCCGTGCAGCGCTGGCGTGCCGCCCGGAGCTCCTCGGCGTCGAGGCGGC
CGCGGCGGAGACGGCCTCCCGCTGCCGCCCGCCACGGCTTCCATGACGGAGACGCCACTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis