Browse Element(s) Details


Os.25573.1.S1_a_at

Description gb:AK066144.1
DB_XREF= gi:32976162
TID=Os.25573.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25573 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0065C16.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056E07, full insert sequence.
FL= gb:AK066144.1 gb:AK058350.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1774011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17724NANA10+8626237..8632696Zinc knuckle family protein, expressed
LOC_Os10g17740Os.25573.1.S1_a_at11/1110+8648945..8653679expressed protein
LOC_Os10g17750OsAffx.20542.1.S1_at11/1110+8654131..8655125hypothetical protein
LOC_Os10g17759NANA10+8657285..8657471NA
LOC_Os10g17770Os.8318.1.S1_at11/1110+8661053..8665765chromdomain-containing protein CRD101, putative, expressed
LOC_Os10g17780OsAffx.6685.1.S1_at11/1110+8666361..8667728oxidoreductase, FAD-binding family protein, expressed
LOC_Os10g17790Os.46589.1.S1_at9/1110+8669367..8671434Remorin, C-terminal region family protein, expressed
LOC_Os10g17800OsAffx.18275.1.S1_x_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17800OsAffx.18275.1.S1_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17810OsAffx.18276.1.S1_at9/1110+8677144..8680054hypothetical protein
LOC_Os10g17810Os.31929.3.S1_x_at2/1110+8677144..8680054hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25573.1.S1_a_at--726--6371Chr10:8653080..8653104 (25 bp)
GATCCTGTCACTACTAGTGTCACTA
LOC_Os10g17740
Os.25573.1.S1_a_at--625--1451Chr10:8653138..8653162 (25 bp)
AGAAGAGTGCTGCAGCAACCCCAGA
LOC_Os10g17740
Os.25573.1.S1_a_at--335--6991Chr10:8653228..8653252 (25 bp)
GTACCGTGTGCAATGTGGTCGTCAA
LOC_Os10g17740
Os.25573.1.S1_a_at--1089--7491Chr10:8653242..8653266 (25 bp)
GTGGTCGTCAACAGCCAGAAAGTTT
LOC_Os10g17740
Os.25573.1.S1_a_at--871--2671Chr10:8653318..8653342 (25 bp)
AAGCGCAGCCACCTATAGCCTGAGG
LOC_Os10g17740
Os.25573.1.S1_a_at--980--10311Chr10:8653368..8653392 (25 bp)
TTTCTCCGGTTCTATTTTGTTGCAA
LOC_Os10g17740
Os.25573.1.S1_a_at--688--2211Chr10:8653408..8653432 (25 bp)
ACAAGCTCCTGTACTCCTAATGAAT
LOC_Os10g17740
Os.25573.1.S1_a_at--532--6551Chr10:8653456..8653480 (25 bp)
GATTATTTGGGCTCTTTGTGCCTGC
LOC_Os10g17740
Os.25573.1.S1_a_at--94--5891Chr10:8653504..8653528 (25 bp)
GAGCGAAGGTTGTCTTGTGCCTGTC
LOC_Os10g17740
Os.25573.1.S1_a_at--969--4471Chr10:8653522..8653546 (25 bp)
GCCTGTCTTCCAGTTGTTTATTGAC
LOC_Os10g17740
Os.25573.1.S1_a_at--560--5211Chr10:8653582..8653606 (25 bp)
GAATTTAGCCCTGTTGTTTAATGAC
LOC_Os10g17740
Target Sequence 
GATCCTGTCACTACTAGTGTCACTACCAGTGTGATTCCTGCTGCACAAACGAAGAAGAAGAAGAGTGCTGCAGCAACCCC
AGAGGAACTGGAGGTGAAGAGGAGGCGTGTACTTGACGCTGGAGCAGCTCAAGGAGAAGTGAAAATATGTACCGTGTGCA
ATGTGGTCGTCAACAGCCAGAAAGTTTATGAGTTTCACATAATTGGTCAGAAGCATAAGGCCATGGTACAGAAACAGCAA
GCGCAGCCACCTATAGCCTGAGGTGGAAAGCAACTATGCTTGCTCATTTTTCTCCGGTTCTATTTTGTTGCAACAGAGAA
CAGAATGCACAAGCTCCTGTACTCCTAATGAATGTAACTTAGCTAAACTGCTTGAAGATTATTTGGGCTCTTTGTGCCTG
CCGCAGATAAGTAGTCGGAGTTTGGAGCGAAGGTTGTCTTGTGCCTGTCTTCCAGTTGTTTATTGACCAATCCAAGATTG
CAGAATGTTGCCCTCGCTATGTGAATTTAGCCCTGTTGTTTAATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25573.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis