Browse Element(s) Details


Os.46589.1.S1_at

Description gb:AK060392.1
DB_XREF= gi:32970410
TID=Os.46589.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46589 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0093I09.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A10, full insert sequence.
FL= gb:AK060392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g177909/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17740Os.25573.1.S1_a_at11/1110+8648945..8653679expressed protein
LOC_Os10g17750OsAffx.20542.1.S1_at11/1110+8654131..8655125hypothetical protein
LOC_Os10g17759NANA10+8657285..8657471NA
LOC_Os10g17770Os.8318.1.S1_at11/1110+8661053..8665765chromdomain-containing protein CRD101, putative, expressed
LOC_Os10g17780OsAffx.6685.1.S1_at11/1110+8666361..8667728oxidoreductase, FAD-binding family protein, expressed
LOC_Os10g17790Os.46589.1.S1_at9/1110+8669367..8671434Remorin, C-terminal region family protein, expressed
LOC_Os10g17800OsAffx.18275.1.S1_x_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17800OsAffx.18275.1.S1_at11/1110+8674423..8675562hypothetical protein
LOC_Os10g17810OsAffx.18276.1.S1_at9/1110+8677144..8680054hypothetical protein
LOC_Os10g17810Os.31929.3.S1_x_at2/1110+8677144..8680054hypothetical protein
LOC_Os10g17820Os.27691.1.S1_x_at1/1110+8682754..8688484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17830NANA10+8693742..8694443hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46589.1.S1_at--145--2491Chr10:8670718..8670742 (25 bp)
AACAGCTTCATTTTCCCGAGAGAAG
LOC_Os10g17790
Os.46589.1.S1_at--364--371Chr10:8670777..8670801 (25 bp)
ATCAAATGCCATCTTTGGCTTCCGC
LOC_Os10g17790
Os.46589.1.S1_at--1090--5771Chr10:8670805..8670829 (25 bp)
GACGAGTTCATATTCTAGTGAGGCT
LOC_Os10g17790
Os.46589.1.S1_at--484--5611Chr10:8670981..8671005 (25 bp)
GACAATGGATACCATCGTCGAATGG
LOC_Os10g17790
Os.46589.1.S1_at--844--971Chr10:8671227..8671251 (25 bp)
AGGATCAACAAGGTGGCCGCAGCAT
LOC_Os10g17790
Os.46589.1.S1_at--395--2891Chr10:8671236..8671260 (25 bp)
AAGGTGGCCGCAGCATCAAGGCTGA
LOC_Os10g17790
Os.46589.1.S1_at--703--5751Chr10:8671325..8671349 (25 bp)
GACGGGAAAGCTTCCCGGCGCATGT
LOC_Os10g17790
Os.46589.1.S1_at--713--791Chr10:8671346..8671370 (25 bp)
ATGTGGCTGCTTCTGAAAACCATCA
LOC_Os10g17790
Os.46589.1.S1_at--804--7431Chr10:8671381..8671405 (25 bp)
GTGTAGTGGATGTGGCTGTTTCAAA
LOC_Os10g17790
Os.46589.1.S1_at--1136--2711Chr10:8671429..8671453 (25 bp)
AAGCAGACGCTGAATTCCTTTAATT
NONE
Os.46589.1.S1_at--729--10331Chr10:8671447..8671471 (25 bp)
TTTAATTCAATTATCGTGTACGACC
NONE
Target Sequence 
AACAGCTTCATTTTCCCGAGAGAAGAAAGAGAGCAAGAAGTTTGAGCAAGACAAGGCAAATCAAATGCCATCTTTGGCTT
CCGCGCCGACGAGTTCATATTCTAGTGAGGCTGAAGCAATGGCAGATACGTGGGAGAAGGAAAAGATGGCAAAAATCAAG
AAGCAGTACAACATGACAATGGATACCATCGTCGAATGGGAGGCCGAGAAGAAGGCCAAGGCCAAANGCCAGANGGAGTT
GAAAGAGGGCGATAATTCAGAGCGGAAGCGAGAGAAGGCGCTGGAGGAGTACAACGACGAGATTACAAGGATCAACAAGG
TGGCCGCAGCATCAAGGCTGACGGCGGAGGAGAAGCGGAGGAGCGCAGAGAGGAAGGTGAGGGAGAAGGCAGAGAGGATT
CGGGTGACGGGAAAGCTTCCCGGCGCATGTGGCTGCTTCTGAAAACCATCAATGTGTCAATGTGTAGTGGATGTGGCTGT
TTCAAATGAAATTTATGTGAAATTGAACCAAGCAGACGCTGAATTCCTTTAATTCAATTATCGTGTACGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis