Browse Element(s) Details


Os.820.1.S1_s_at

Description gb:AK068755.1
DB_XREF= gi:32978780
TID=Os.820.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxidase (P0702D12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159G18, full insert sequence.
FL= gb:AK104388.1 gb:AK068755.1 gb:AK104781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1902011/11Peroxidase family protein, expressed
LOC_Os06g162801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18980NANA1+10721000..10721317transposon protein, putative, unclassified
LOC_Os01g18990NANA1+10729390..10731345retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g19000NANA1+10731755..10736110retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g19010Os.46314.2.S1_x_at4/111+10738118..10740255transposon protein, putative, unclassified
LOC_Os01g19010OsAffx.25095.3.S1_x_at1/111+10738118..10740255transposon protein, putative, unclassified
LOC_Os01g19010OsAffx.32036.1.S1_at1/111+10738118..10740255transposon protein, putative, unclassified
LOC_Os01g19010Os.47114.1.S1_x_at1/111+10738118..10740255transposon protein, putative, unclassified
LOC_Os01g19010OsAffx.25095.5.S1_x_at1/111+10738118..10740255transposon protein, putative, unclassified
LOC_Os01g19020Os.820.1.S1_s_at11/111+10745381..10747011Peroxidase family protein, expressed
LOC_Os01g19020Os.820.1.S1_at10/111+10745381..10747011Peroxidase family protein, expressed
LOC_Os01g19030Os.46012.3.S1_x_at8/111+10755402..10758930retrotransposon protein, putative, unclassified
LOC_Os01g19030Os.46012.2.S1_x_at7/111+10755402..10758930retrotransposon protein, putative, unclassified
LOC_Os01g19030Os.27088.1.A1_x_at3/111+10755402..10758930retrotransposon protein, putative, unclassified
LOC_Os01g19040OsAffx.31018.3.S1_x_at11/111+10761709..10769039hypothetical protein
LOC_Os01g19040OsAffx.31018.2.S1_x_at10/111+10761709..10769039hypothetical protein
LOC_Os01g19040Os.50578.1.S1_x_at6/111+10761709..10769039hypothetical protein
LOC_Os01g19050Os.45774.1.S1_at11/111+10769766..10774723transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.820.1.S1_s_at--849--1851Chr01:10745621..10745645 (25 bp)
ACGACCACACAGAGACGATGATCAA
LOC_Os01g19020
Os.820.1.S1_s_at--920--5991Chr01:10745610..10745634 (25 bp)
GAGACGATGATCAACGACGACTATG
LOC_Os01g19020
Os.820.1.S1_s_at--796--6291Chr01:10745605..10745629 (25 bp)
GATGATCAACGACGACTATGCTTGT
LOC_Os01g19020
Os.820.1.S1_s_at--795--2591Chr01:10745598..10745622 (25 bp)
AACGACGACTATGCTTGTAGTAGAT
LOC_Os01g19020
Os.820.1.S1_s_at--184--1191Chr01:10745580..10745604 (25 bp)
AGTAGATTGATTTGGCTTTCACACA
LOC_Os01g19020
Os.820.1.S1_s_at--1135--6512Chr06:9277351..9277579 (25 bp)
GATTTGGCTTTCACACATCCATTCT
LOC_Os06g16280
Os.820.1.S1_s_at--437--4891Chr01:10745566..10745590 (25 bp)
GCTTTCACACATCCATTCTTTTGAT
LOC_Os01g19020
Os.820.1.S1_s_at--289--4331Chr01:10745554..10745578 (25 bp)
CCATTCTTTTGATTTCCATTTGTTG
LOC_Os01g19020
Os.820.1.S1_s_at--673--9511Chr01:10745521..10745545 (25 bp)
TCTCTGTAATTTCTCAGCCATGTTA
LOC_Os01g19020
Os.820.1.S1_s_at--1128--8731Chr01:10745517..10745541 (25 bp)
TGTAATTTCTCAGCCATGTTAATCT
LOC_Os01g19020
Os.820.1.S1_s_at--412--3711Chr01:10745509..10745533 (25 bp)
CTCAGCCATGTTAATCTGTTACATA
LOC_Os01g19020
Target Sequence 
ACGACCACACAGAGACGATGATCAACGACGACTATGCTTGTAGTAGATTGATTTGGCTTTCACACATCCATTCTTTTGAT
TTCCATTTGTTGTAATTTGTTCTCTGTAATTTCTCAGCCATGTTAATCTGTTACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.820.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis