Browse Element(s) Details


Os.11851.1.S1_at

Description gb:AK069202.1
DB_XREF= gi:32979226
TID=Os.11851.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009G17, full insert sequence.
FL= gb:AK069202.1 gb:AK099306.1 gb:AY342321.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1190010/11Sugar carrier protein C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11850NANA3+6186002..6190381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g11860NANA3+6191493..6195746hypothetical protein
LOC_Os03g11874OsAffx.12829.1.S1_at11/113+6197170..6204193expressed protein
LOC_Os03g11874Os.53694.1.S1_at11/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.25095.4.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.25095.3.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874Os.43567.1.S1_x_at3/113+6197170..6204193expressed protein
LOC_Os03g11874Os.53217.1.S1_x_at2/113+6197170..6204193expressed protein
LOC_Os03g11874OsAffx.22659.1.S1_x_at2/113+6197170..6204193expressed protein
LOC_Os03g11890OsAffx.12830.1.S1_at11/113+6207023..6211624expressed protein
LOC_Os03g11900Os.11851.1.S1_at10/113+6212597..6217412Sugar carrier protein C, putative, expressed
LOC_Os03g11910Os.11419.1.S1_at11/113+6223200..6226432dnaK protein, expressed
LOC_Os03g11930OsAffx.25064.1.S1_at11/113+6229544..6230839hypothetical protein
LOC_Os03g11940OsAffx.12831.1.S1_at11/113+6237448..6240521hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11851.1.S1_at--59--4411Chr03:6213001..6213025 (25 bp)
GCCACCGTTTAATTTAGTCGCTGAA
LOC_Os03g11900
Os.11851.1.S1_at--105--10131Chr03:6212914..6212938 (25 bp)
TATGTATCAGCTCATGCGTGGCCAT
LOC_Os03g11900
Os.11851.1.S1_at--458--1571Chr03:6212870..6212894 (25 bp)
AGCTAGCGACGGCATGCAAACTTAA
LOC_Os03g11900
Os.11851.1.S1_at--843--1471Chr03:6212836..6212860 (25 bp)
AGCAATTTCGGCTCTGTACGTACTG
LOC_Os03g11900
Os.11851.1.S1_at--975--91Chr03:6212790..6212814 (25 bp)
ATTCGGAGTGCTTCTTGAGTTTGTA
LOC_Os03g11900
Os.11851.1.S1_at--580--6631Chr03:6212752..6212776 (25 bp)
GTTGTATCCTTTTATGTTTCTCCGA
LOC_Os03g11900
Os.11851.1.S1_at--1038--10111Chr03:6212740..6212764 (25 bp)
TATGTTTCTCCGAGCAAGCCTGACA
LOC_Os03g11900
Os.11851.1.S1_at--332--2651Chr03:6212725..6212749 (25 bp)
AAGCCTGACACGAGTTGGCGCCTCA
LOC_Os03g11900
Os.11851.1.S1_at--323--8411Chr03:6212709..6212733 (25 bp)
GGCGCCTCAGTGTAACTTGCAGAAC
LOC_Os03g11900
Os.11851.1.S1_at--412--5271Chr03:6212683..6212707 (25 bp)
GAATGCCATATATCTGCACCTTTTT
LOC_Os03g11900
Os.11851.1.S1_at--320--5811NONE
GACCGGTGAGGGTACGTTCATACTG
NONE
Target Sequence 
GCCACCGTTTAATTTAGTCGCTGAACTGTTCTATATATATGTNCACTGTCTNCACTGATCAAATCACGGTTGAGAAACTA
CACCGATGCTATGTATCAGCTCATGCGTGGCCATGTGAGATTGATCGATAAGCAGCTAGCGACGGCATGCAAACTTAAGG
GTAGTGTAGCAATTTCGGCTCTGTACGTACTGCAAGCAATGGCGAGTATTTCAATTCGGAGTGCTTCTTGAGTTTGTAGT
TTGTTGTATGAGTTGTATCCTTTTATGTTTCTCCGAGCAAGCCTGACACGAGTTGGCGCCTCAGTGTAACTTGCAGAACA
GAATGCCATATATCTGCACCTTTTTTTGCCAAATTTTAATTCTGGAGCTCTGAAATTCGACGTTTTATGCATATAGTCGG
TGACCGGTGAGGGTACGTTCATACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis