Browse Element(s) Details


OsAffx.25064.1.S1_at

Description tigr:9631.m01113
TID=OsAffx.25064.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1193011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11890OsAffx.12830.1.S1_at11/113+6207023..6211624expressed protein
LOC_Os03g11900Os.11851.1.S1_at10/113+6212597..6217412Sugar carrier protein C, putative, expressed
LOC_Os03g11910Os.11419.1.S1_at11/113+6223200..6226432dnaK protein, expressed
LOC_Os03g11930OsAffx.25064.1.S1_at11/113+6229544..6230839hypothetical protein
LOC_Os03g11940OsAffx.12831.1.S1_at11/113+6237448..6240521hypothetical protein
LOC_Os03g11950Os.54950.1.S1_at11/113+6243885..6246971CRAL/TRIO domain containing protein, expressed
LOC_Os03g11960Os.4727.1.S1_at11/113+6251070..6254484Superoxide dismutase 2, putative, expressed
LOC_Os03g11970Os.12320.1.S1_at11/113+6254912..6258578Tubulin alpha-2 chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25064.1.S1_at--1132--5111Chr03:6230754..6230778 (25 bp)
GCACAGCGCGGCATAAGCGCGGAAA
LOC_Os03g11930
OsAffx.25064.1.S1_at--575--5871Chr03:6230100..6230119 (20 bp)
GAGCCGAGCACCAGTCGCGAGCTAA
LOC_Os03g11930
OsAffx.25064.1.S1_at--260--4971Chr03:6230093..6230117 (25 bp)
GCACCAGTCGCGAGCTAAGGGAGCT
LOC_Os03g11930
OsAffx.25064.1.S1_at--653--7231Chr03:6230087..6230111 (25 bp)
GTCGCGAGCTAAGGGAGCTTATCAT
LOC_Os03g11930
OsAffx.25064.1.S1_at--1090--7631Chr03:6230075..6230099 (25 bp)
GGGAGCTTATCATTAGATCTTGTTC
LOC_Os03g11930
OsAffx.25064.1.S1_at--547--151Chr03:6230064..6230088 (25 bp)
ATTAGATCTTGTTCGAGTCATCGTC
LOC_Os03g11930
OsAffx.25064.1.S1_at--923--1271Chr03:6230061..6230085 (25 bp)
AGATCTTGTTCGAGTCATCGTCGTT
LOC_Os03g11930
OsAffx.25064.1.S1_at--997--3591Chr03:6230057..6230081 (25 bp)
CTTGTTCGAGTCATCGTCGTTCGTA
LOC_Os03g11930
OsAffx.25064.1.S1_at--667--9371Chr03:6230052..6230076 (25 bp)
TCGAGTCATCGTCGTTCGTATTGGG
LOC_Os03g11930
OsAffx.25064.1.S1_at--523--10231Chr03:6230034..6230058 (25 bp)
TATTGGGGATTCTCTGCCGGTGAAA
LOC_Os03g11930
OsAffx.25064.1.S1_at--798--6571Chr03:6230032..6230051 (20 bp)
GATTCTCTGCCGGTGAAAGGCGGCG
LOC_Os03g11930
Target Sequence 
GCACAGCGCGGCATAAGCGCGGAAAAGATGGGGCCGTGTCCGTGCTCGAGCCGAGCACCAGTCGCGAGCTAAGGGAGCTT
ATCATTAGATCTTGTTCGAGTCATCGTCGTTCGTATTGGGGATTCTCTGCCGGTGAAAGGCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis