Browse Element(s) Details


Os.4727.1.S1_at

Description gb:AK073785.1
DB_XREF= gi:32983808
TID=Os.4727.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068D19, full insert sequence.
FL= gb:AK073785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1196011/11Superoxide dismutase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11910Os.11419.1.S1_at11/113+6223200..6226432dnaK protein, expressed
LOC_Os03g11930OsAffx.25064.1.S1_at11/113+6229544..6230839hypothetical protein
LOC_Os03g11940OsAffx.12831.1.S1_at11/113+6237448..6240521hypothetical protein
LOC_Os03g11950Os.54950.1.S1_at11/113+6243885..6246971CRAL/TRIO domain containing protein, expressed
LOC_Os03g11960Os.4727.1.S1_at11/113+6251070..6254484Superoxide dismutase 2, putative, expressed
LOC_Os03g11970Os.12320.1.S1_at11/113+6254912..6258578Tubulin alpha-2 chain, putative, expressed
LOC_Os03g11980Os.7435.1.S1_at11/113+6259389..6261827Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os03g11990Os.37276.1.S1_at11/113+6261981..6263463BolA-like protein, expressed
LOC_Os03g12000Os.7282.1.S1_at10/113+6265128..6267536DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g12010Os.49367.1.S1_a_at11/113+6269847..6274353expressed protein
LOC_Os03g12010Os.49367.2.S1_x_at11/113+6269847..6274353expressed protein
LOC_Os03g12020Os.27826.1.S1_at11/113+6274595..627672050S ribosomal protein L15, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006878biological_processcopper ion homeostasis
GO:0006979biological_processresponse to oxidative stress
GO:0009416biological_processresponse to light stimulus
GO:0019430biological_processremoval of superoxide radicals
GO:0046688biological_processresponse to copper ion
GO:0005737cellular_componentcytoplasm
GO:0005777cellular_componentperoxisome
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004785molecular_functioncopper, zinc superoxide dismutase activity
GO:0016532molecular_functionsuperoxide dismutase copper chaperone activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4727.1.S1_at--377--4511Chr03:6253112..6253136 (25 bp)
GCCCCATTTTAATCCTCACAATAAG
LOC_Os03g11960
Os.4727.1.S1_at--623--1411Chr03:6253060..6253084 (25 bp)
AGACATGTGGGCGACCTGGGAAACA
LOC_Os03g11960
Os.4727.1.S1_at--140--9871Chr03:6252785..6252806 (22 bp)
TACAGATTTCACTAAGCGGGCCTCA
LOC_Os03g11960
Os.4727.1.S1_at--757--2671Chr03:6252772..6252796 (25 bp)
AAGCGGGCCTCATTCCATATTGGGA
LOC_Os03g11960
Os.4727.1.S1_at--1057--6891Chr03:6251386..6251410 (25 bp)
GTATCATTGGACTTCGATCTGCAGT
LOC_Os03g11960
Os.4727.1.S1_at--1124--831Chr03:6251307..6251331 (25 bp)
ATGGAAATCATTGGCGCTCCTCATT
LOC_Os03g11960
Os.4727.1.S1_at--278--3791Chr03:6251291..6251315 (25 bp)
CTCCTCATTCCAGACTGTTTCAAGA
LOC_Os03g11960
Os.4727.1.S1_at--462--10271Chr03:6251260..6251284 (25 bp)
TTTGACGTGTTATCACTGCCTTCAG
LOC_Os03g11960
Os.4727.1.S1_at--12--6851Chr03:6251156..6251180 (25 bp)
GTTTCCTCATACTTATACTGTACCT
LOC_Os03g11960
Os.4727.1.S1_at--866--6971Chr03:6251137..6251161 (25 bp)
GTACCTTGGACTGAAGCTGTGCAAA
LOC_Os03g11960
Os.4727.1.S1_at--1121--7411Chr03:6251101..6251125 (25 bp)
GTGTTACTATTTCTCAATCTTCAGC
LOC_Os03g11960
Target Sequence 
GCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAACATAG
TAGCCAACAAAGATGGTGTTGCAGATATCTTCATAAAGGACCTACAGATTTCACTAAGCGGGCCTCATTCCATATTGGGA
AGGGCAGTTGTTGTTCATGCTGATTCTNANTGACCTAGGAAGGGGTGGTCATGAACTCAGTAAAACAACAGGAAATGCAG
GAGCAAGAATTGGATGCGGTATCATTGGACTTCGATCTGCAGTTTAACAATCTATAGTCATGAAGCTTGAGGTGGTGGTG
GTATGCTGTTCAGAGATATGGAAATCATTGGCGCTCCTCATTCCAGACTGTTTCAAGAATGGCTTTTGACGTGTTATCAC
TGCCTTCAGTTATNTATACGTACTTTGTTACGGAGTATATTCTTTTTTTGAACGAACATACGGAGTATATTCTATAAATA
AAGGAAAAGTTTCCTCATACTTATACTGTACCTTGGACTGAAGCTGTGCAAACTCACAATAATGTGTTACTATTTCTCAA
TCTTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis