Browse Element(s) Details


OsAffx.12831.1.S1_at

Description tigr:9631.m01114
TID=OsAffx.12831.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1194011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11900Os.11851.1.S1_at10/113+6212597..6217412Sugar carrier protein C, putative, expressed
LOC_Os03g11910Os.11419.1.S1_at11/113+6223200..6226432dnaK protein, expressed
LOC_Os03g11930OsAffx.25064.1.S1_at11/113+6229544..6230839hypothetical protein
LOC_Os03g11940OsAffx.12831.1.S1_at11/113+6237448..6240521hypothetical protein
LOC_Os03g11950Os.54950.1.S1_at11/113+6243885..6246971CRAL/TRIO domain containing protein, expressed
LOC_Os03g11960Os.4727.1.S1_at11/113+6251070..6254484Superoxide dismutase 2, putative, expressed
LOC_Os03g11970Os.12320.1.S1_at11/113+6254912..6258578Tubulin alpha-2 chain, putative, expressed
LOC_Os03g11980Os.7435.1.S1_at11/113+6259389..6261827Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os03g11990Os.37276.1.S1_at11/113+6261981..6263463BolA-like protein, expressed
LOC_Os03g12000Os.7282.1.S1_at10/113+6265128..6267536DEAD/DEAH box helicase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12831.1.S1_at--561--4051Chr03:6237973..6237997 (25 bp)
CGAGGTATCAGGAGTCGGGCACCAA
LOC_Os03g11940
OsAffx.12831.1.S1_at--153--6111Chr03:6237962..6237986 (25 bp)
GAGTCGGGCACCAAAGCATTGTCGC
LOC_Os03g11940
OsAffx.12831.1.S1_at--189--2711Chr03:6237949..6237973 (25 bp)
AAGCATTGTCGCTGGTGGTCCCATC
LOC_Os03g11940
OsAffx.12831.1.S1_at--1103--1891Chr03:6237920..6237944 (25 bp)
ACGTCTCACGCTGGAGCTTGTCGGC
LOC_Os03g11940
OsAffx.12831.1.S1_at--640--4091Chr03:6237850..6237874 (25 bp)
CGACGACTGTTGCATCCTCCATAGT
LOC_Os03g11940
OsAffx.12831.1.S1_at--11--231Chr03:6237830..6237854 (25 bp)
ATAGTCCACGTCACGTCGGAGCTCG
LOC_Os03g11940
OsAffx.12831.1.S1_at--1137--3331Chr03:6237778..6237802 (25 bp)
CACGTCTCACGTTGGAGCTAGTTGC
LOC_Os03g11940
OsAffx.12831.1.S1_at--289--7031Chr03:6237733..6237757 (25 bp)
GTACATGCCACGTCAGAACTCGTCG
LOC_Os03g11940
OsAffx.12831.1.S1_at--824--9471Chr03:6237592..6237616 (25 bp)
TCTGCGTCTATCAACTCCGACGATA
LOC_Os03g11940
OsAffx.12831.1.S1_at--465--5092Chr08:23472411..23472432 (22 bp)
GCACCTCTCTTCGATTCAGCAATGA
NONE
OsAffx.12831.1.S1_at--331--6571Chr03:6237482..6237506 (25 bp)
GATTCAGCAATGACGGCCAAGCCCC
LOC_Os03g11940
Target Sequence 
CGAGGTATCAGGAGTCGGGCACCAAAGCATTGTCGCTGGTGGTCCCATCGTCCACGTCTCACGCTGGAGCTTGTCGGCGG
CGGCTGCATCCTCCACCGTCCACGCCACGTCGGAGCTCGGCGGCGACGACTGTTGCATCCTCCATAGTCCACGTCACGTC
GGAGCTCGTCACCGGCGGTTGCGTCCTCCGTCGTCCACGTCTCACGTTGGAGCTAGTTGCCGATGGCCGCATCCTCCGCC
GTACATGCCACGTCAGAACTCGTCGCCGGCGGCCGCGTCCTCCGTCATCTACGCCCCACGCCGGAGCTCATCAGCGACGG
CCGCATCCTCCATTGTCCACACCACATCGGAGCTCGTCGCCGGTGGCCGTGTCCTCCTTTCTCTGCGTCTATCAACTCCG
ACGATAGCTCCATCCCCGGCCATCGCGACAACCCACGTCCATCAGCTCCGACTCCAAGCTCGCACTGCTCCTCAACGTGG
CACCTCTCTTCGATTCAGCAATGACGGCCAAGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis