Browse Element(s) Details


Os.7435.1.S1_at

Description gb:AK100702.1
DB_XREF= gi:32985911
TID=Os.7435.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7435 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114O06, full insert sequence.
FL= gb:AK121985.1 gb:AK100702.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1198011/11Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11940OsAffx.12831.1.S1_at11/113+6237448..6240521hypothetical protein
LOC_Os03g11950Os.54950.1.S1_at11/113+6243885..6246971CRAL/TRIO domain containing protein, expressed
LOC_Os03g11960Os.4727.1.S1_at11/113+6251070..6254484Superoxide dismutase 2, putative, expressed
LOC_Os03g11970Os.12320.1.S1_at11/113+6254912..6258578Tubulin alpha-2 chain, putative, expressed
LOC_Os03g11980Os.7435.1.S1_at11/113+6259389..6261827Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os03g11990Os.37276.1.S1_at11/113+6261981..6263463BolA-like protein, expressed
LOC_Os03g12000Os.7282.1.S1_at10/113+6265128..6267536DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g12010Os.49367.1.S1_a_at11/113+6269847..6274353expressed protein
LOC_Os03g12010Os.49367.2.S1_x_at11/113+6269847..6274353expressed protein
LOC_Os03g12020Os.27826.1.S1_at11/113+6274595..627672050S ribosomal protein L15, chloroplast precursor, putative, expressed
LOC_Os03g12030Os.9724.1.S1_at11/113+6281907..6283964very-long-chain fatty acid condensing enzyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004563molecular_functionbeta-N-acetylhexosaminidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7435.1.S1_at--1021--5151Chr03:6259839..6259863 (25 bp)
GCAACCTGTCGCAGTAGCAGTGTCA
LOC_Os03g11980
Os.7435.1.S1_at--490--1531Chr03:6259824..6259848 (25 bp)
AGCAGTGTCAGTTTGCTCCATCGCT
LOC_Os03g11980
Os.7435.1.S1_at--166--2751Chr03:6259744..6259768 (25 bp)
AAGAAGAATCCGCATCGATCTTGGG
LOC_Os03g11980
Os.7435.1.S1_at--1004--8931Chr03:6259715..6259739 (25 bp)
TGACGTCGTACACTGATTGCTGAAG
LOC_Os03g11980
Os.7435.1.S1_at--691--2291Chr03:6259655..6259679 (25 bp)
AAATGTTCTGTTCTGATGCCCTCTT
LOC_Os03g11980
Os.7435.1.S1_at--210--5431Chr03:6259623..6259647 (25 bp)
GAACCCGCCGATTGCGAATTGTTCA
LOC_Os03g11980
Os.7435.1.S1_at--162--2331Chr03:6259596..6259620 (25 bp)
AAAGTCGCGGACTTATGCCGTGCAG
LOC_Os03g11980
Os.7435.1.S1_at--476--7391Chr03:6259554..6259578 (25 bp)
GTGAGTAGTTTCTGCACTTGATGCT
LOC_Os03g11980
Os.7435.1.S1_at--483--6531Chr03:6259524..6259548 (25 bp)
GATTTTTGCACTGTTTATTCCTTCA
LOC_Os03g11980
Os.7435.1.S1_at--1008--10531Chr03:6259503..6259527 (25 bp)
TTCATTTTCACAATAACACGGGTAG
LOC_Os03g11980
Os.7435.1.S1_at--59--2631Chr03:6259417..6259441 (25 bp)
AACCATCTGGTTGTAGTTTTGTACG
LOC_Os03g11980
Target Sequence 
GCAACCTGTCGCAGTAGCAGTGTCAGTTTGCTCCATCGCTTCGCCTCGCTGTCGCCTGCACAGTGCGAAGGAATGTTCAG
AAATCCAAGTGACAGAAGAAGAATCCGCATCGATCTTGGGGGCGTGACGTCGTACACTGATTGCTGAAGAAACCAAGAAC
AGAATAAACGAATGCCTACTAAACAAATGTTCTGTTCTGATGCCCTCTTCCGGAGGGAACCCGCCGATTGCGAATTGTTC
AAGAAAGTCGCGGACTTATGCCGTGCAGAAAAGAAAGTTTTCTTTGTGAGTAGTTTCTGCACTTGATGCTGAACAGATTT
TTGCACTGTTTATTCCTTCATTTTCACAATAACACGGGTAGATAGAGTAGTAGTAGTATTTGGCTAGTGCAATAGATGAA
CAAGGTTGTAGTAGAAGTGCAGAACCATCTGGTTGTAGTTTTGTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis