Browse Element(s) Details


Os.12320.1.S1_at

Description gb:AK071837.1
DB_XREF= gi:32981860
TID=Os.12320.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.12320 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for alpha tubulin, partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023117K20, full insert sequence.
FL= gb:AK071837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1197011/11Tubulin alpha-2 chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11930OsAffx.25064.1.S1_at11/113+6229544..6230839hypothetical protein
LOC_Os03g11940OsAffx.12831.1.S1_at11/113+6237448..6240521hypothetical protein
LOC_Os03g11950Os.54950.1.S1_at11/113+6243885..6246971CRAL/TRIO domain containing protein, expressed
LOC_Os03g11960Os.4727.1.S1_at11/113+6251070..6254484Superoxide dismutase 2, putative, expressed
LOC_Os03g11970Os.12320.1.S1_at11/113+6254912..6258578Tubulin alpha-2 chain, putative, expressed
LOC_Os03g11980Os.7435.1.S1_at11/113+6259389..6261827Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os03g11990Os.37276.1.S1_at11/113+6261981..6263463BolA-like protein, expressed
LOC_Os03g12000Os.7282.1.S1_at10/113+6265128..6267536DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g12010Os.49367.1.S1_a_at11/113+6269847..6274353expressed protein
LOC_Os03g12010Os.49367.2.S1_x_at11/113+6269847..6274353expressed protein
LOC_Os03g12020Os.27826.1.S1_at11/113+6274595..627672050S ribosomal protein L15, chloroplast precursor, putative, expressed
LOC_Os03g12030Os.9724.1.S1_at11/113+6281907..6283964very-long-chain fatty acid condensing enzyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0015630cellular_componentmicrotubule cytoskeleton
GO:0045298cellular_componenttubulin
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12320.1.S1_at--364--7271Chr03:6255532..6255556 (25 bp)
GTCCACTCCATCAAGACCAGGAGGA
LOC_Os03g11970
Os.12320.1.S1_at--516--3471Chr03:6255515..6255539 (25 bp)
CAGGAGGACTGTGCAGTTCGTCGAC
LOC_Os03g11970
Os.12320.1.S1_at--1143--4091Chr03:6255402..6255518 (25 bp)
CGACTGGTGTCCGACAGGGTTCAAG
LOC_Os03g11970
Os.12320.1.S1_at--707--4091Chr03:6255391..6255415 (25 bp)
CGACAGGGTTCAAGTGCGGGATAAA
LOC_Os03g11970
Os.12320.1.S1_at--716--6171Chr03:6255321..6255345 (25 bp)
GAGGAGGGCGGTGTGCATGATCAGC
LOC_Os03g11970
Os.12320.1.S1_at--393--2491Chr03:6255100..6255124 (25 bp)
AACAGGGCGAGTACTGATCGGGCTA
LOC_Os03g11970
Os.12320.1.S1_at--43--9931Chr03:6255089..6255113 (25 bp)
TACTGATCGGGCTAGCCTGCTAGGT
LOC_Os03g11970
Os.12320.1.S1_at--950--4451Chr03:6255075..6255099 (25 bp)
GCCTGCTAGGTGAATCTAGCACGGT
LOC_Os03g11970
Os.12320.1.S1_at--1138--7691Chr03:6255016..6255040 (25 bp)
GGGTCTCTCGGTTTACATGGACTCT
LOC_Os03g11970
Os.12320.1.S1_at--706--7871Chr03:6255007..6255031 (25 bp)
GGTTTACATGGACTCTTGTGACTTT
LOC_Os03g11970
Os.12320.1.S1_at--638--2011Chr03:6254996..6255020 (25 bp)
ACTCTTGTGACTTTGTGGTGTGAGA
LOC_Os03g11970
Target Sequence 
GTCCACTCCATCAAGACCAGGAGGACTGTGCAGTTCGTCGACTGGTGTCCGACAGGGTTCAAGTGCGGGATAAACTACCA
GCCGCCGACGGCGNTGCCGGGAGGGGACCTGGCGAAGGTGAGGAGGGCGGTGTGCATGATCAGCAACAACACGGCGGTGG
CGGAGGTGTTCTCGCGGATCGACCGCAAGTTCGACCTCATGTACGCCAAGCGCGCGTTCGTGCACTGGTACGTGGNCGAA
GGGATGGAGGAAGGGGAGTTCTCCGAGGCCAGGGAGGACCTCGCCGCGCTGGAGAAGGACTACGAGGAGGTCGGCGCCGA
AGTCGAGGACGACGACGAGGAACAGGGCGAGTACTGATCGGGCTAGCCTGCTAGGTGAATCTAGCACGGTANATAAACCG
CAAGTTTGTAAGGTCGGTGGAAGGGGGTCTCTCGGTTTACATGGACTCTTGTGACTTTGTGGTGTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis