Browse Element(s) Details


Os.49367.1.S1_a_at

Description gb:AK100742.1
DB_XREF= gi:32985951
TID=Os.49367.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118E24, full insert sequence.
FL= gb:AK100742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1201011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11950Os.54950.1.S1_at11/113+6243885..6246971CRAL/TRIO domain containing protein, expressed
LOC_Os03g11960Os.4727.1.S1_at11/113+6251070..6254484Superoxide dismutase 2, putative, expressed
LOC_Os03g11970Os.12320.1.S1_at11/113+6254912..6258578Tubulin alpha-2 chain, putative, expressed
LOC_Os03g11980Os.7435.1.S1_at11/113+6259389..6261827Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os03g11990Os.37276.1.S1_at11/113+6261981..6263463BolA-like protein, expressed
LOC_Os03g12000Os.7282.1.S1_at10/113+6265128..6267536DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g12010Os.49367.1.S1_a_at11/113+6269847..6274353expressed protein
LOC_Os03g12010Os.49367.2.S1_x_at11/113+6269847..6274353expressed protein
LOC_Os03g12020Os.27826.1.S1_at11/113+6274595..627672050S ribosomal protein L15, chloroplast precursor, putative, expressed
LOC_Os03g12030Os.9724.1.S1_at11/113+6281907..6283964very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os03g12040OsAffx.12832.1.S1_at11/113+6297809..6298413hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49367.1.S1_a_at--704--5311Chr03:6273816..6273840 (25 bp)
GAAGGTGCTAGTTCTACATCTTTTG
LOC_Os03g12010
Os.49367.1.S1_a_at--587--3151Chr03:6273855..6273879 (25 bp)
AATTCTAGCAGTGCTGGCTCTTACC
LOC_Os03g12010
Os.49367.1.S1_a_at--495--2691Chr03:6273997..6274021 (25 bp)
AAGCTGCATCGTCACCATTGAACTC
LOC_Os03g12010
Os.49367.1.S1_a_at--399--6231Chr03:6274060..6274084 (25 bp)
GATGGCCAGAGTTCCATTAGTTTCT
LOC_Os03g12010
Os.49367.1.S1_a_at--514--3591Chr03:6274074..6274098 (25 bp)
CATTAGTTTCTTTCAGCTGAGGCCT
LOC_Os03g12010
Os.49367.1.S1_a_at--270--4731Chr03:6274089..6274113 (25 bp)
GCTGAGGCCTGGACGTACAATTATC
LOC_Os03g12010
Os.49367.1.S1_a_at--643--2031Chr03:6274131..6274155 (25 bp)
ACTTACTTTTAATTCCTTGCACCTG
LOC_Os03g12010
Os.49367.1.S1_a_at--147--5671Chr03:6274166..6274190 (25 bp)
GACATGCAACGGGACGATCCTGTGA
LOC_Os03g12010
Os.49367.1.S1_a_at--505--791Chr03:6274194..6274218 (25 bp)
ATGTGTCTTGTACATGTCTTCGTTT
LOC_Os03g12010
Os.49367.1.S1_a_at--953--9631Chr03:6274281..6274305 (25 bp)
TCAGGTTGTGTGACCCATCAGTTTC
LOC_Os03g12010
Os.49367.1.S1_a_at--68--10591Chr03:6274303..6274327 (25 bp)
TTCTCTCCGTACTAGTCTCTTGAAG
LOC_Os03g12010
Target Sequence 
GAAGGTGCTAGTTCTACATCTTTTGTAGAAAATGGCAGAAATTCTAGCAGTGCTGGCTCTTACCCCCTAAGCCAGGGGGA
CAATGACAAATCTGAAAATGTGCAAGCTAATCGAGTTGATGTAAGTTCANTGCCAGATCATCCTGTAAGTAGTCATGTAG
CAGCAGAGGATCAAGCTGGCCAAGCTGCATCGTCACCATTGAACTCACCAACTAGAGGTATCGTTGTTGACATTTCAGAT
GGTTGATGGCCAGAGTTCCATTAGTTTCTTTCAGCTGAGGCCTGGACGTACAATTATCCAGACTACAGTTGTAACACTTA
CTTTTAATTCCTTGCACCTGTCTACTGCTAGACATGCAACGGGACGATCCTGTGAAGNATGTGTCTTGTACATGTCTTCG
TTTNTNCCTTTCTCATTTCACCTTTTCTTTTCTTAGCATAGATCAGTTCAGTATACTTAACTCTGTCAGGTTGTGTGACC
CATCAGTTTCTCTCCGTACTAGTCTCTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49367.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis