Browse Element(s) Details


Os.27826.1.S1_at

Description gb:AK066527.1
DB_XREF= gi:32976545
TID=Os.27826.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013071N20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071N20, full insert sequence.
FL= gb:AK066527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1202011/1150S ribosomal protein L15, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11960Os.4727.1.S1_at11/113+6251070..6254484Superoxide dismutase 2, putative, expressed
LOC_Os03g11970Os.12320.1.S1_at11/113+6254912..6258578Tubulin alpha-2 chain, putative, expressed
LOC_Os03g11980Os.7435.1.S1_at11/113+6259389..6261827Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os03g11990Os.37276.1.S1_at11/113+6261981..6263463BolA-like protein, expressed
LOC_Os03g12000Os.7282.1.S1_at10/113+6265128..6267536DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g12010Os.49367.1.S1_a_at11/113+6269847..6274353expressed protein
LOC_Os03g12010Os.49367.2.S1_x_at11/113+6269847..6274353expressed protein
LOC_Os03g12020Os.27826.1.S1_at11/113+6274595..627672050S ribosomal protein L15, chloroplast precursor, putative, expressed
LOC_Os03g12030Os.9724.1.S1_at11/113+6281907..6283964very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os03g12040OsAffx.12832.1.S1_at11/113+6297809..6298413hypothetical protein
LOC_Os03g12050Os.24333.1.S1_x_at11/113+6301098..6302967expressed protein
LOC_Os03g12050Os.24333.2.S1_at11/113+6301098..6302967expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27826.1.S1_at--960--6191Chr03:6275235..6275258 (24 bp)
GAGGAATGCATATTGGCTTGCCGAA
LOC_Os03g12020
Os.27826.1.S1_at--733--4911Chr03:6275249..6275273 (25 bp)
GCTTGCCGAAGTATGTGCCGTTCAA
LOC_Os03g12020
Os.27826.1.S1_at--48--6771Chr03:6275268..6275292 (25 bp)
GTTCAATTTGAGAGACTTGGCGCGT
LOC_Os03g12020
Os.27826.1.S1_at--79--7691Chr03:6275343..6275367 (25 bp)
GGGTTTGATTAATCCGTCTGGCAGG
LOC_Os03g12020
Os.27826.1.S1_at--200--8291Chr03:6276422..6276446 (25 bp)
GGCATTCTCTGCTTCAGCCAAGGAG
LOC_Os03g12020
Os.27826.1.S1_at--685--3791Chr03:6276450..6276474 (25 bp)
CTCGAGGCAGCTGGTTGTACTTTAA
LOC_Os03g12020
Os.27826.1.S1_at--996--851Chr03:6276497..6276521 (25 bp)
ATGGCTACCACAATCTTATCTGAAG
LOC_Os03g12020
Os.27826.1.S1_at--46--10431Chr03:6276512..6276536 (25 bp)
TTATCTGAAGAACCAAGCTCGTGCA
LOC_Os03g12020
Os.27826.1.S1_at--244--251Chr03:6276602..6276626 (25 bp)
ATATACACTGTACTTCTCCTTTACC
LOC_Os03g12020
Os.27826.1.S1_at--816--9891Chr03:6276642..6276666 (25 bp)
TACTTATTTCTCTTACCTTGTTCCA
LOC_Os03g12020
Os.27826.1.S1_at--455--4111Chr03:6276683..6276707 (25 bp)
CGAATTTTGAATCCGTGCGATATGC
LOC_Os03g12020
Target Sequence 
GAGGAATGCATATTGGCTTGCCGAAGTATGTGCCGTTCAATTTGAGAGACTTGGCGCGTGGCGGGTTCAAGGATGGTGAC
GAGATATCATTGGAATCCTTGAAATCGAGGGGTTTGATTAATCCGTCTGGCAGGGAGAGAAAGCTTCCTCTGAAGATTTT
AGGAGATGGTGATGTATCAGTCAAGTTGAATATCAAGGCTGGGGCATTCTCTGCTTCAGCCAAGGAGAAGCTCGAGGCAG
CTGGTTGTACTTTAAGTCTGGTACCAAAGCGGAAGAAATGGCTACCACAATCTTATCTGAAGAACCAAGCTCGTGCAGAA
GAATACTTTAGCAAGAAAAATGGTGGTGCTGGTGAATCTGATGAAGCATCTGCATAGAATTCATATACACTGTACTTCTC
CTTTACCCTTTTCTTTAACATATACTTATTTCTCTTACCTTGTTCCAAAAGTTCCACGTTCAACGAATTTTGAATCCGTG
CGATATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis