Browse Element(s) Details


Os.24333.1.S1_x_at

Description gb:AK064657.1
DB_XREF= gi:32974675
TID=Os.24333.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24333 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-G04, full insert sequence.
FL= gb:AK064657.1 gb:AK120487.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1205011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12020Os.27826.1.S1_at11/113+6274595..627672050S ribosomal protein L15, chloroplast precursor, putative, expressed
LOC_Os03g12030Os.9724.1.S1_at11/113+6281907..6283964very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os03g12040OsAffx.12832.1.S1_at11/113+6297809..6298413hypothetical protein
LOC_Os03g12050Os.24333.1.S1_x_at11/113+6301098..6302967expressed protein
LOC_Os03g12050Os.24333.2.S1_at11/113+6301098..6302967expressed protein
LOC_Os03g12064Os.14776.1.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.2.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064OsAffx.25065.1.S1_at10/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.1.A2_at1/113+6306422..6313851expressed protein
LOC_Os03g12080NANA3+6318131..6319924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12090OsAffx.3204.1.S1_at10/113+6321465..6331026expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24333.1.S1_x_at--395--8371Chr03:6302784..6302808 (25 bp)
GGCGATAGATCGGACGGCCCTGTTC
LOC_Os03g12050
Os.24333.1.S1_x_at--127--10651Chr03:6302762..6302786 (25 bp)
TTCCTCCTAGCGCTGGATAATTCGT
LOC_Os03g12050
Os.24333.1.S1_x_at--995--1631Chr03:6302703..6302727 (25 bp)
AGCGTAGCTGCTAGTCTCGATCCAT
LOC_Os03g12050
Os.24333.1.S1_x_at--330--9391Chr03:6302687..6302711 (25 bp)
TCGATCCATGTCTCAGCGAGGTAGG
LOC_Os03g12050
Os.24333.1.S1_x_at--749--6291Chr03:6302472..6302496 (25 bp)
GATGATCTGGGCATCCGGCAGATAA
LOC_Os03g12050
Os.24333.1.S1_x_at--61--1631Chr03:6302432..6302456 (25 bp)
AGCGGTGCGCACATAATTTCGGAAT
LOC_Os03g12050
Os.24333.1.S1_x_at--359--6171Chr03:6302378..6302402 (25 bp)
GAGGATTTCTGCAGCTACCTCATCC
LOC_Os03g12050
Os.24333.1.S1_x_at--270--2411Chr03:6302302..6302326 (25 bp)
AAACAGTCATGGAAGGTCCTGCCTT
LOC_Os03g12050
Os.24333.1.S1_x_at--760--2411Chr03:6302243..6302267 (25 bp)
AAAAATCCCAGTTCATGTGCATGCT
LOC_Os03g12050
Os.24333.1.S1_x_at--651--8691Chr03:6302228..6302252 (25 bp)
TGTGCATGCTCTTTGTATTTCGCTT
LOC_Os03g12050
Os.24333.1.S1_x_at--1054--5192Chr12:1665745..1665771 (23 bp)
GAATTGAACTTTGAGCCACCTTTGA
NONE
Target Sequence 
GGCGATAGATCGGACGGCCCTGTTCCTCCTAGCGCTGGATAATTCGTGTGGATGTCCATGGCGATGTGATGTCGCCAGCG
CAGCGTAGCTGCTAGTCTCGATCCATGTCTCAGCGAGGTAGGGAGGAGGCACTGGGTTGACGAGGACCGAGGACAGCGCA
GCCCGGCGGTGGCTGCTTCCGCTGCCCCCNAGTAAGCGCTGAAGCTGATGATCTGGGCATCCGGCAGATAAAGCTGTTGC
GGAACCAGCGGTGCGCACATAATTTCGGAATCGCATCCCCCATGAGAGTAGGCCGACATGGAGGATTTCTGCAGCTACCT
CATCCTTCGCCACTGCATGTTCCTCCCGATCTCTCTCTCCCCTCTCTCTGGCGAGGAAACAGTCATGGAAGGTCCTGCCT
TGATGTGAAAAATNATTTGGTTGATCTTGAGAAAAAAAAATCCCAGTTCATGTGCATGCTCTTTGTATTTCGCTTGCTGC
ATTTTTTTTAGTGAATTGAACTTTGAGCCACCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24333.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis