Browse Element(s) Details


OsAffx.3204.1.S1_at

Description tigr:9631.m01128
TID=OsAffx.3204.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1209010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12040OsAffx.12832.1.S1_at11/113+6297809..6298413hypothetical protein
LOC_Os03g12050Os.24333.1.S1_x_at11/113+6301098..6302967expressed protein
LOC_Os03g12050Os.24333.2.S1_at11/113+6301098..6302967expressed protein
LOC_Os03g12064Os.14776.1.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.2.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064OsAffx.25065.1.S1_at10/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.1.A2_at1/113+6306422..6313851expressed protein
LOC_Os03g12080NANA3+6318131..6319924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12090OsAffx.3204.1.S1_at10/113+6321465..6331026expressed protein
LOC_Os03g12100Os.54774.1.S1_x_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12100Os.54774.1.S1_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12110Os.37866.1.S1_at11/113+6333974..6336920Homocysteine S-methyltransferase 1, putative, expressed
LOC_Os03g12120Os.49206.1.S1_at11/113+6337210..6344710No apical meristem protein, expressed
LOC_Os03g12130OsAffx.25066.1.S1_at11/113+6347606..6348043hypothetical protein
LOC_Os03g12140Os.49195.1.S1_at11/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12140Os.55846.1.S1_at1/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3204.1.S1_at--184--5691Chr03:6325405..6325429 (25 bp)
GACTATCAATCATGGGCGTGTCCAA
LOC_Os03g12090
OsAffx.3204.1.S1_at--1103--4631Chr03:6325420..6325444 (25 bp)
GCGTGTCCAATTTAAGGGTCCAAGT
LOC_Os03g12090
OsAffx.3204.1.S1_at--678--7791Chr03:6325436..6325460 (25 bp)
GGTCCAAGTATGTTTGAGCGCCACT
LOC_Os03g12090
OsAffx.3204.1.S1_at--1023--5871Chr03:6325451..6325475 (25 bp)
GAGCGCCACTACTATATGTATACTG
LOC_Os03g12090
OsAffx.3204.1.S1_at--977--8751Chr03:6325467..6325491 (25 bp)
TGTATACTGGTTTCACGACTGGTCA
LOC_Os03g12090
OsAffx.3204.1.S1_at--1037--7931Chr03:6325587..6325611 (25 bp)
GGAGGGCCAATTATTAACTTCAATG
LOC_Os03g12090
OsAffx.3204.1.S1_at--407--2231Chr03:6325694..6325870 (25 bp)
AAAGTTTGGTTATATCCCTCGCTTG
LOC_Os03g12090
OsAffx.3204.1.S1_at--948--4931Chr03:6326336..6326360 (25 bp)
GCATTGGTTCCAGCGTAGACATACA
LOC_Os03g12090
OsAffx.3204.1.S1_at--23--2831NONE
AAGTTGGTATATTCCGCATGTGCAA
NONE
OsAffx.3204.1.S1_at--746--2831Chr03:6330615..6330639 (25 bp)
AAGGTTCCACGTGCACTATAAGTCT
LOC_Os03g12090
OsAffx.3204.1.S1_at--928--6191Chr03:6330860..6330883 (24 bp)
GAGGCAAATACATTTTCTCTGCAAG
LOC_Os03g12090
Target Sequence 
GACTATCAATCATGGGCGTGTCCAATTTAAGGGTCCAAGTATGTTTGAGCGCCACTACTATATGTATACTGGTTTCACGA
CTGGTCAGTCTGGCATTGGAGGGCCAATTATTAACTTCAATGGGCAAGTTTTGGGGATGACTAATGTTCTAGGAATGGGA
TTTATTCCTTCATCTGTTATACTTCATTGCTTGGATATGTGGAAAAAGTTTGGTTATATCCCTCGCTTGCATATTGGGAT
GAAACTTTCAGCCATGAAGTTTCTAGATCCAATTCATGTGGAGAAGATCTCTCGCAAATGTAATATTGATTCGGGTCTAA
TAGTTAAAGAGTTGGAGATTGAACTTATGCAAATATGCGAGGATCATCTTGACAAAGGAAGAGGCATTGGTTCCAGCGTA
GACATACAAGTTGGTATATTCCGCATGTGCAAAGGTTCCACGTGCACTATAAGTCTGAGATTAAATATATCAAATGATGT
AGAGGTGTTTGCAAGAGGCAAATACATTTTCTCTGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis