Browse Element(s) Details


Os.55846.1.S1_at

Description gb:AK108885.1
DB_XREF= gi:32994094
TID=Os.55846.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-D11, full insert sequence.
FL= gb:AK108885.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g121401/11Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os05g445701/11Histidine-containing phosphotransfer protein 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12090OsAffx.3204.1.S1_at10/113+6321465..6331026expressed protein
LOC_Os03g12100Os.54774.1.S1_x_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12100Os.54774.1.S1_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12110Os.37866.1.S1_at11/113+6333974..6336920Homocysteine S-methyltransferase 1, putative, expressed
LOC_Os03g12120Os.49206.1.S1_at11/113+6337210..6344710No apical meristem protein, expressed
LOC_Os03g12130OsAffx.25066.1.S1_at11/113+6347606..6348043hypothetical protein
LOC_Os03g12140Os.49195.1.S1_at11/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12140Os.55846.1.S1_at1/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12150Os.15087.1.S1_at11/113+6356529..6359358D-mannose binding lectin family protein, expressed
LOC_Os03g12160Os.16151.1.S1_at11/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12160Os.52160.1.S1_at1/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12170OsAffx.3205.1.S1_at10/113+6369228..6370796hypothetical protein
LOC_Os03g12180Os.34632.1.S1_at11/113+6371926..6374593MA3 domain-containing protein, putative, expressed
LOC_Os03g12190OsAffx.22269.1.S1_at11/113+6375080..6376387F-box domain containing protein
LOC_Os03g12200OsAffx.22268.1.S1_at10/113+6377687..6380420F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0007165biological_processsignal transduction
GO:0009736biological_processcytokinin mediated signaling
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004871molecular_functionsignal transducer activity
GO:0005515molecular_functionprotein binding
GO:0009927molecular_functionhistidine phosphotransfer kinase activity
GO:0016772molecular_functiontransferase activity, transferring phosphorus-containing groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55846.1.S1_at--375--9871Chr06:5087302..5087326 (25 bp)
TACAGCGCCATCAACGAGTGGCTCG
NONE
Os.55846.1.S1_at--587--7831Chr06:5087182..5087206 (25 bp)
GGTAGGTCCAATGTGCCCAACTTTT
NONE
Os.55846.1.S1_at--304--3271Chr06:5087165..5087189 (25 bp)
CAACTTTTCAACTGCTTTTCTACCA
NONE
Os.55846.1.S1_at--584--8791Chr06:5087117..5087141 (25 bp)
TGTTCAGGTCAATCAATGCCCCATG
NONE
Os.55846.1.S1_at--937--12325Chr12:17523038..17523058 (21 bp)
AGTTGCTAAACTTTAGCCCCTCTCT
NONE
Os.55846.1.S1_at--935--7851Chr06:5086937..5086961 (25 bp)
GGTAGTGACTTATTCTTTTGTGAGA
NONE
Os.55846.1.S1_at--937--3011Chr06:5086886..5086910 (25 bp)
AATGCTTCCATCCATTGTTACCTTC
NONE
Os.55846.1.S1_at--154--2451Chr06:5086856..5086880 (25 bp)
AAAATCTAAGATCCTCCTGCGATGC
NONE
Os.55846.1.S1_at--592--9251Chr06:5086845..5086869 (25 bp)
TCCTCCTGCGATGCTATCTTAATTT
NONE
Os.55846.1.S1_at--686--7491Chr06:5086813..5086837 (25 bp)
GTGGTGGAATCATTGCCGCATATGT
NONE
Os.55846.1.S1_at--575--9771Chr06:5086751..5086775 (25 bp)
TAAGTCTCATCCCATCCTAAATTAT
NONE
Target Sequence 
TACAGCGCCATCAACGAGTGGCTCGGTGCGGAGGCGTGCGGCGTCATGGTCGCCCGGTCGTCGTCACGCAGCAGCACATC
CACTTCGTGTCTCCGAGGCTCGGACAGGTCGGTACTGGGCGGTAGGTCCAATGTGCCCAACTTTTCAACTGCTTTTCTAC
CAGCCCACTCCAATCAGACCACACTTGTTCAGGTCAATCAATGCCCCATGCAAAGACTGCCCTGAGAAATGAGACTTTTT
AAGGGGGTGTTTGCGAGCTCTCAAAAACATAAGTTCTTAGGGTAAGGACACTTTTATGAGAGGGACTAAAGTTTAGTCTC
TAGTTGCTAAACTTTAGCCCCTCTCTTAAAAACATAAGTCCTTAGGGTAGTGACTTATTCTTTTGTGAGAGGGACTAAAG
TTTAGTTCAATTGTTCAATGCTTCCATCCATTGTTACCTTCGCAACAAAATCTAAGATCCTCCTGCGATGCTATCTTAAT
TTGGAAGTAGTGGTGGAATCATTGCCGCATATGTACAGTAACGATTATTTTTAAGATTTATAATCTTAAAATAAGTCTCA
TCCCATCCTAAATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55846.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis