Browse Element(s) Details


OsAffx.22268.1.S1_at

Description tigr:9631.m01141
TID=OsAffx.22268.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1220010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12140Os.49195.1.S1_at11/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12140Os.55846.1.S1_at1/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12150Os.15087.1.S1_at11/113+6356529..6359358D-mannose binding lectin family protein, expressed
LOC_Os03g12160Os.16151.1.S1_at11/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12160Os.52160.1.S1_at1/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12170OsAffx.3205.1.S1_at10/113+6369228..6370796hypothetical protein
LOC_Os03g12180Os.34632.1.S1_at11/113+6371926..6374593MA3 domain-containing protein, putative, expressed
LOC_Os03g12190OsAffx.22269.1.S1_at11/113+6375080..6376387F-box domain containing protein
LOC_Os03g12200OsAffx.22268.1.S1_at10/113+6377687..6380420F-box domain containing protein
LOC_Os03g12210Os.43888.1.S1_at9/113+6382350..6386001expressed protein
LOC_Os03g12220OsAffx.10056.1.S1_x_at11/113+6389686..6390687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12230Os.40419.1.S1_at11/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12230Os.48013.1.A1_at9/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12236Os.56153.1.S1_at11/113+6400905..6401527expressed protein
LOC_Os03g12242Os.15781.1.S1_at10/113+6403508..6406035expressed protein
LOC_Os03g12242Os.21812.4.S1_x_at6/113+6403508..6406035expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22268.1.S1_at--609--4692Chr03:6379172..6379196 (25 bp)
GCGGCACCAGACTGTGGGTTCCAGA
LOC_Os03g12200
OsAffx.22268.1.S1_at--832--4671NONE
GCGGTGGCGAGCATCAGGATATCAC
NONE
OsAffx.22268.1.S1_at--775--331Chr03:6380065..6380089 (25 bp)
ATACATTGGCGAATCATCCGAAGTT
LOC_Os03g12200
OsAffx.22268.1.S1_at--58--8031Chr03:6380108..6380132 (25 bp)
GGAGGTAACTATAACTGGCTTCACA
LOC_Os03g12200
OsAffx.22268.1.S1_at--413--9791Chr03:6380119..6380143 (25 bp)
TAACTGGCTTCACAAGGACGGATGA
LOC_Os03g12200
OsAffx.22268.1.S1_at--80--6491Chr03:6380147..6380171 (25 bp)
GATAGACCTCGTGAGTTTGCTGTTT
LOC_Os03g12200
OsAffx.22268.1.S1_at--1111--4711Chr03:6380165..6380189 (25 bp)
GCTGTTTGGGAGCTCAAGTTCAATC
LOC_Os03g12200
OsAffx.22268.1.S1_at--451--2831Chr03:6380180..6380204 (25 bp)
AAGTTCAATCATGAGCGTCACCATA
LOC_Os03g12200
OsAffx.22268.1.S1_at--848--1631Chr03:6380193..6380217 (25 bp)
AGCGTCACCATACATGCCACTGAAA
LOC_Os03g12200
OsAffx.22268.1.S1_at--176--2251Chr03:6380308..6380332 (25 bp)
AAATTCCATTTACTGATCACGGCTG
LOC_Os03g12200
OsAffx.22268.1.S1_at--326--3871Chr03:6380320..6380344 (25 bp)
CTGATCACGGCTGTTGGCGTTTTCA
LOC_Os03g12200
Target Sequence 
GCGGCACCAGACTGTGGGTTCCAGACCCGATGTCGATTGCGGCGGTAGGTAGCGAGGTGCGCTGCGGGGCCAGCATCGAT
GGACGGCGAGGTCTGGGGCCAGCGTTGATGGCGGCGGCGGCGAGCTGCGGGGTTCAAGGGTTCAAGGTGGCGTGCAGCCT
GCGAGATCCAGCCCCAGCTTCGACGGCGGTGGCGAGCATCAGGATATCACTATTTAAGGACCGAGATACATTGGCGAATC
ATCCGAAGTTAACGTTGGAATTGCTTCAGGAGGTAACTATAACTGGCTTCACAAGGACGGATGAAGAGATAGACCTCGTG
AGTTTGCTGTTTGGGAGCTCAAGTTCAATCATGAGCGTCACCATACATGCCACTGAAAAGGAGGATACAGAGAAAGTCTC
GTTGAAAAATATTATGGCAGAAGATGATGACAACGACGATGATACAACAACTCATCAGCAACTACTGGAAATTCCATTTA
CTGATCACGGCTGTTGGCGTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis