Browse Element(s) Details


Os.21812.4.S1_x_at

Description gb:NM_187693.1
DB_XREF= gi:34902471
GEN=OJ1743A09.15
TID=Os.21812.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21812 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Putative DNAJ protein (OJ1743A09.15), mRNA.
PROD=Putative DNAJ protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g122426/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12200OsAffx.22268.1.S1_at10/113+6377687..6380420F-box domain containing protein
LOC_Os03g12210Os.43888.1.S1_at9/113+6382350..6386001expressed protein
LOC_Os03g12220OsAffx.10056.1.S1_x_at11/113+6389686..6390687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12230Os.40419.1.S1_at11/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12230Os.48013.1.A1_at9/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12236Os.56153.1.S1_at11/113+6400905..6401527expressed protein
LOC_Os03g12242Os.15781.1.S1_at10/113+6403508..6406035expressed protein
LOC_Os03g12242Os.21812.4.S1_x_at6/113+6403508..6406035expressed protein
LOC_Os03g12250Os.21812.2.S1_a_at11/113+6413971..6417612Leucine Rich Repeat family protein, expressed
LOC_Os03g12260Os.26879.1.S1_at11/113+6422568..6424588Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21812.4.S1_x_at--358--551Chr03:6405291..6405315 (25 bp)
ATCCCTCTGGCGATCTATCAGGAAT
LOC_Os03g12242
Os.21812.4.S1_x_at--94--6051Chr03:6405508..6405532 (25 bp)
GAGATTTGCTTCAATCAGCGCACAA
LOC_Os03g12242
Os.21812.4.S1_x_at--737--1651Chr03:6405524..6405548 (25 bp)
AGCGCACAATCTGTTACTCCATTAT
LOC_Os03g12242
Os.21812.4.S1_x_at--1011--9611Chr03:6405568..6405592 (25 bp)
TCATCCAGCTGTTCTGTTGCTAGAA
LOC_Os03g12242
Os.21812.4.S1_x_at--1125--6571Chr03:6405594..6405618 (25 bp)
GATTCCTGATGATCACAGTGCTCTT
LOC_Os03g12242
Os.21812.4.S1_x_at--610--351Chr03:6405644..6405664 (21 bp)
ATCAGGTCGACTCCAAAGCGGCAAA
LOC_Os03g12242
Os.21812.4.S1_x_at--1090--2431Chr03:6406109..6406133 (25 bp)
AAAAGTGTGTTCAGCCGCACAGGCT
NONE
Os.21812.4.S1_x_at--189--3831Chr03:6406132..6406152 (21 bp)
CTGCCTGTGGTTTGGGTAAGGACAA
NONE
Os.21812.4.S1_x_at--463--4851Chr03:6407932..6407956 (25 bp)
GCTACGATCTCATATACGGCGGCGA
NONE
Os.21812.4.S1_x_at--1153--7631Chr03:6408079..6408103 (25 bp)
GGGAGCTGGACTACATCCGTGGCCA
NONE
Os.21812.4.S1_x_at--972--651NONE
ATGCACAAGTCTTCCCTTGGTGAAA
NONE
Target Sequence 
ATCCCTCTGGCGATCTATCAGGAATTTGTTCAGGGGCGACGATGGGGATACGAGATTTGCTTCAATCAGCGCACAATCTG
TTACTCCATTATGGACTCCGCGACGAGGATCTCATCCAGCTGTTCTGTTGCTAGAAGGATTCCTGATGATCACAGTGCTC
TTATTCGTGATAAGCAGAACTCGTATAATCAGGTCGACTCCAAAGCGGCAAATCCGAATGATGTAAAAGTGTGTTCAGCC
GCACAGGCTGCCTGTGGTTTGGGTAAGGACAACGAGATCCGGGAGAAGAAGAGCGCCTGCTACACCGACGTCGAGAATGG
ATTGTGGGGATGGGCGTGCAAGTCCTCGGCGACGGAGAAGGAGAACTGCGTGCTGCGGTGCCTCTCGCCGGAGTGCTACG
ATCTCATATACGGCGGCGACCCGCTTGAGGAAGGGGAGCTGGACTACATCCGTGGCCACGAGTACAAGTACTGCATGCAC
AAGTCTTCCCTTGGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21812.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis