Browse Element(s) Details


Os.43888.1.S1_at

Description gb:CA764209
DB_XREF= gi:27545971
DB_XREF=AF53-Rpf_02_K12_T7_046.ab1
CLONE=C0000636
TID=Os.43888.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43888 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1743A09.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g122109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12150Os.15087.1.S1_at11/113+6356529..6359358D-mannose binding lectin family protein, expressed
LOC_Os03g12160Os.16151.1.S1_at11/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12160Os.52160.1.S1_at1/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12170OsAffx.3205.1.S1_at10/113+6369228..6370796hypothetical protein
LOC_Os03g12180Os.34632.1.S1_at11/113+6371926..6374593MA3 domain-containing protein, putative, expressed
LOC_Os03g12190OsAffx.22269.1.S1_at11/113+6375080..6376387F-box domain containing protein
LOC_Os03g12200OsAffx.22268.1.S1_at10/113+6377687..6380420F-box domain containing protein
LOC_Os03g12210Os.43888.1.S1_at9/113+6382350..6386001expressed protein
LOC_Os03g12220OsAffx.10056.1.S1_x_at11/113+6389686..6390687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12230Os.40419.1.S1_at11/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12230Os.48013.1.A1_at9/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12236Os.56153.1.S1_at11/113+6400905..6401527expressed protein
LOC_Os03g12242Os.15781.1.S1_at10/113+6403508..6406035expressed protein
LOC_Os03g12242Os.21812.4.S1_x_at6/113+6403508..6406035expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43888.1.S1_at--890--831Chr03:6385248..6385272 (25 bp)
ATGGAGCACCTCGACTTTACAAAGC
LOC_Os03g12210
Os.43888.1.S1_at--687--1551Chr03:6385270..6385294 (25 bp)
AGCTAGGAGCATGGTCATCGACGCA
LOC_Os03g12210
Os.43888.1.S1_at--897--3531Chr03:6385285..6385309 (25 bp)
CATCGACGCATGTGGATTGGATCAA
LOC_Os03g12210
Os.43888.1.S1_at--122--2231Chr03:6385319..6385343 (25 bp)
ACAAGTGTGTGGTCGTTGCTACTGA
LOC_Os03g12210
Os.43888.1.S1_at--87--10731Chr03:6385334..6385358 (25 bp)
TTGCTACTGATGTGCCCTGATCTAA
LOC_Os03g12210
Os.43888.1.S1_at--1148--231NONE
ATATCACTTCGCATCTGTTTGAGGG
NONE
Os.43888.1.S1_at--374--7651Chr03:6385532..6385554 (23 bp)
GGGAGATCGATCATCCAAGGACCAA
LOC_Os03g12210
Os.43888.1.S1_at--222--51Chr03:6385653..6385677 (25 bp)
ATTGTTGTTCGGAAGCTCGAGTTCA
LOC_Os03g12210
Os.43888.1.S1_at--492--5931Chr03:6385683..6385707 (25 bp)
GAGCATGACTATAAGTACCCCTGAA
LOC_Os03g12210
Os.43888.1.S1_at--119--5991Chr03:6385733..6385757 (25 bp)
GAGACTTTTTGCTAGATTCTGACGA
LOC_Os03g12210
Os.43888.1.S1_at--638--1631NONE
AGCGGTGGACGCTGAAGCCAATTTT
NONE
Target Sequence 
ATGGAGCACCTCGACTTTACAAAGCTAGGAGCATGGTCATCGACGCATGTGGATTGGATCAATATTTGGTCACAAGTGTG
TGGTCGTTGCTACTGATGTGCCCTGATCTAATATCACTTCGCATCTGTTTGAGGGGGTGGGGAGATCGATCATCCAAGGA
CCAAGATACACGGACGGACAATCGTAATATATCGTTGGAATTTCTGGAAGAGGTAAGATTAACTAGCTTCACAGGAACAG
ATGAGGAAATGGACCTCGTGAGATTGTTGTTCGGAAGCTCGAGTTCAATCAAGAGCATGACTATAAGTACCCCTGAAAAG
GAGATAGCTGATACCTGNTCGGGAGACTTTTTGCTAGATTCTGACGACGACTATNCTTATTATCACCGACTGCTGNAAAT
TGCTNCACTAAATCACCTCAGTCGTTGGCATTACAAGAGATTTGAATATACTTGGACGCGATATGCAACAGAGGACGCAC
GAGCGGTGGACGCTGAAGCCAATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis