Browse Element(s) Details


Os.40419.1.S1_at

Description gb:CF340609
DB_XREF= gi:33829573
DB_XREF=RCL1--08-J04.g1
CLONE=RCL1--08-J04
TID=Os.40419.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.40419 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1223011/11caleosin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12180Os.34632.1.S1_at11/113+6371926..6374593MA3 domain-containing protein, putative, expressed
LOC_Os03g12190OsAffx.22269.1.S1_at11/113+6375080..6376387F-box domain containing protein
LOC_Os03g12200OsAffx.22268.1.S1_at10/113+6377687..6380420F-box domain containing protein
LOC_Os03g12210Os.43888.1.S1_at9/113+6382350..6386001expressed protein
LOC_Os03g12220OsAffx.10056.1.S1_x_at11/113+6389686..6390687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12230Os.40419.1.S1_at11/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12230Os.48013.1.A1_at9/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12236Os.56153.1.S1_at11/113+6400905..6401527expressed protein
LOC_Os03g12242Os.15781.1.S1_at10/113+6403508..6406035expressed protein
LOC_Os03g12242Os.21812.4.S1_x_at6/113+6403508..6406035expressed protein
LOC_Os03g12250Os.21812.2.S1_a_at11/113+6413971..6417612Leucine Rich Repeat family protein, expressed
LOC_Os03g12260Os.26879.1.S1_at11/113+6422568..6424588Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005509molecular_functioncalcium ion binding
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40419.1.S1_at--73--3631Chr03:6397474..6397498 (25 bp)
CTTCCCAAGCCATGTAAGCGATTCT
LOC_Os03g12230
Os.40419.1.S1_at--1055--2671Chr03:6397489..6397513 (25 bp)
AAGCGATTCTATTTCTACCATGCAG
LOC_Os03g12230
Os.40419.1.S1_at--803--111Chr03:6397494..6397518 (25 bp)
ATTCTATTTCTACCATGCAGGGATC
LOC_Os03g12230
Os.40419.1.S1_at--127--10591Chr03:6397558..6397582 (25 bp)
TTCTCGATCGTCTTTGATGTCTTTG
LOC_Os03g12230
Os.40419.1.S1_at--134--751Chr03:6397574..6397598 (25 bp)
ATGTCTTTGGTCAGTGGTCACTGAA
LOC_Os03g12230
Os.40419.1.S1_at--426--7831Chr03:6397589..6397613 (25 bp)
GGTCACTGAACACTGATAACCTGAT
LOC_Os03g12230
Os.40419.1.S1_at--272--1251Chr03:6397632..6397656 (25 bp)
AGTTGGCTGCAAAGCACGCGGTTGT
LOC_Os03g12230
Os.40419.1.S1_at--1072--7291Chr03:6397655..6397679 (25 bp)
GTGCGTGACGGCAGCTCGACGTACA
LOC_Os03g12230
Os.40419.1.S1_at--152--4791Chr03:6397668..6397692 (25 bp)
GCTCGACGTACATCAGTTGAGACTT
LOC_Os03g12230
Os.40419.1.S1_at--585--6431Chr03:6397697..6397721 (25 bp)
GATCATATGGTTTAAGTACCAACAG
LOC_Os03g12230
Os.40419.1.S1_at--208--10351Chr03:6397736..6397760 (25 bp)
TTTACCATTTAATTTCTCTAGATAC
LOC_Os03g12230
Target Sequence 
CTTCCCAAGCCATGTAAGCGATTCTATTTCTACCATGCAGGGATCGAAAAAAAAACTGTTCTTTCTTTCTATCTTTCTTT
TTCTTTCTCGATCGTCTTTGATGTCTTTGGTCAGTGGTCACTGAACACTGATAACCTGATAAGAGAGTGAGAGGCCGGAG
TTGGCTGCAAAGCACGCGGTTGTGCGTGACGGCAGCTCGACGTACATCAGTTGAGACTTGAGAGATCATATGGTTTAAGT
ACCAACAGAAAGGATGTGTAATTTTACCATTTAATTTCTCTAGATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis