Browse Element(s) Details


Os.48013.1.A1_at

Description gb:CR281003
DB_XREF= gi:44667569
DB_XREF=CR281003
CLONE=y789b09p3
TID=Os.48013.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative abscisic acid-induced protein - rice (OJ1743A09.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g122309/11caleosin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12180Os.34632.1.S1_at11/113+6371926..6374593MA3 domain-containing protein, putative, expressed
LOC_Os03g12190OsAffx.22269.1.S1_at11/113+6375080..6376387F-box domain containing protein
LOC_Os03g12200OsAffx.22268.1.S1_at10/113+6377687..6380420F-box domain containing protein
LOC_Os03g12210Os.43888.1.S1_at9/113+6382350..6386001expressed protein
LOC_Os03g12220OsAffx.10056.1.S1_x_at11/113+6389686..6390687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12230Os.40419.1.S1_at11/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12230Os.48013.1.A1_at9/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12236Os.56153.1.S1_at11/113+6400905..6401527expressed protein
LOC_Os03g12242Os.15781.1.S1_at10/113+6403508..6406035expressed protein
LOC_Os03g12242Os.21812.4.S1_x_at6/113+6403508..6406035expressed protein
LOC_Os03g12250Os.21812.2.S1_a_at11/113+6413971..6417612Leucine Rich Repeat family protein, expressed
LOC_Os03g12260Os.26879.1.S1_at11/113+6422568..6424588Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005509molecular_functioncalcium ion binding
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48013.1.A1_at--68--3991Chr03:6398492..6398516 (25 bp)
CGGGTATCCCGTGTCGATTGCTGGT
LOC_Os03g12230
Os.48013.1.A1_at--623--6591Chr03:6398507..6398531 (25 bp)
GATTGCTGGTGCCATACTCATCAAC
LOC_Os03g12230
Os.48013.1.A1_at--32--9514Chr11:12768525..12768967 (25 bp)
TCTCCTCTGTTTTCCATCCATATAA
NONE
Os.48013.1.A1_at--549--8031Chr03:6399017..6399041 (25 bp)
GGAGTGACTCTGAAGCATATGATAC
LOC_Os03g12230
Os.48013.1.A1_at--384--851Chr03:6399195..6399219 (25 bp)
ATGGCAGAACTCATCCAAATGCTTT
LOC_Os03g12230
Os.48013.1.A1_at--156--8351Chr03:6399376..6399396 (21 bp)
GGCTGGATTACTAGCGCTGGTGAAT
LOC_Os03g12230
Os.48013.1.A1_at--792--7971Chr03:6399397..6399421 (25 bp)
GGATGCTACTGTACAGCGTGGCCAA
LOC_Os03g12230
Os.48013.1.A1_at--693--5971Chr03:6399445..6399469 (25 bp)
GAGAAACTGTTAGAGGCGCCTTCGA
LOC_Os03g12230
Os.48013.1.A1_at--817--6851Chr03:6399479..6399503 (25 bp)
GTTTGAGCGACTTCAGGACAGCAAG
LOC_Os03g12230
Os.48013.1.A1_at--820--2871Chr03:6399585..6399609 (25 bp)
AAGGGTCTTTGCTTTGTGTAATTCA
NONE
Os.48013.1.A1_at--378--2291Chr03:6399616..6399640 (25 bp)
AAATGTTAATTACCCCATGACAGTA
NONE
Target Sequence 
CGGGTATCCCGTGTCGATTGCTGGTGCCATACTCATCAACCTCGTCCTCAGCTATCCTACTCAACCGGGGTGGATGCCTT
CTCCTCTGTTTTCCATCCATATAAAGAACATTCACAAGGNTAAGCATGGGAGTGACTCTGAAGCATATGATACTGAAGGG
AGGTTTGATCCATCGAAATTTGATGCTATATTCAGCAAGTATGGCAGAACTCATCCAAATGCTTTGACAAAAGATGAGCT
GAACTCGATGATTAAAGCAAACCGCAATATGTATGATTTCATTGGCTGGATTACTAGCGCTGGTGAATGGATGCTACTGT
ACAGCGTGGCCAAGGATAAAGAAGGGCTGTTGCAACGAGAAACTGTTAGAGGCGCCTTCGATGGCAGCCTGTTTGAGCGA
CTTCAGGACAGCAAGAAATCTGCTTGAATATAGCAATGAGCTGTGCTGCTCGAAGAAAGCGTTGACAGTAAAGAATCTAA
TAAGATTAGAAAAAAAAAGGGTCTTTGCTTTGTGTAATTCAAATGAAAAATGTTAATTACCCCATGACAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48013.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis