Browse Element(s) Details


OsAffx.10056.1.S1_x_at

Description gb:NM_187691.1
DB_XREF= gi:34902467
TID=OsAffx.10056.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (OJ1743A09.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1222011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g309701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12160Os.16151.1.S1_at11/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12160Os.52160.1.S1_at1/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12170OsAffx.3205.1.S1_at10/113+6369228..6370796hypothetical protein
LOC_Os03g12180Os.34632.1.S1_at11/113+6371926..6374593MA3 domain-containing protein, putative, expressed
LOC_Os03g12190OsAffx.22269.1.S1_at11/113+6375080..6376387F-box domain containing protein
LOC_Os03g12200OsAffx.22268.1.S1_at10/113+6377687..6380420F-box domain containing protein
LOC_Os03g12210Os.43888.1.S1_at9/113+6382350..6386001expressed protein
LOC_Os03g12220OsAffx.10056.1.S1_x_at11/113+6389686..6390687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12230Os.40419.1.S1_at11/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12230Os.48013.1.A1_at9/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12236Os.56153.1.S1_at11/113+6400905..6401527expressed protein
LOC_Os03g12242Os.15781.1.S1_at10/113+6403508..6406035expressed protein
LOC_Os03g12242Os.21812.4.S1_x_at6/113+6403508..6406035expressed protein
LOC_Os03g12250Os.21812.2.S1_a_at11/113+6413971..6417612Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10056.1.S1_x_at--450--4154Chr09:18653722..18653746 (25 bp)
CGCCGGTGGTCAACGAGGGTTCGAT
LOC_Os09g30970
OsAffx.10056.1.S1_x_at--1121--2471Chr03:6390132..6390156 (25 bp)
AACGAGGGTTCGATTAGAGGCGGCG
LOC_Os03g12220
OsAffx.10056.1.S1_x_at--842--6171Chr03:6390206..6390230 (25 bp)
GAGGAGTCCCGAGTGAGGCCGGCGA
LOC_Os03g12220
OsAffx.10056.1.S1_x_at--1074--2571Chr03:6390249..6390273 (25 bp)
AACGGGCGGCAATCGCGACGAGACC
LOC_Os03g12220
OsAffx.10056.1.S1_x_at--1145--3031Chr03:6390259..6390283 (25 bp)
AATCGCGACGAGACCATGCCGGGCG
LOC_Os03g12220
OsAffx.10056.1.S1_x_at--617--6011Chr03:6390381..6390405 (25 bp)
GAGAGAGACACTACCGAGTCGAGAC
LOC_Os03g12220
OsAffx.10056.1.S1_x_at--519--5991Chr03:6390401..6390425 (25 bp)
GAGACGGGCGCTGTGATGGGCGACC
LOC_Os03g12220
OsAffx.10056.1.S1_x_at--112--1331Chr03:6390473..6390497 (25 bp)
AGAGGGTGCCCGTAGTCCCGCGTCA
LOC_Os03g12220
OsAffx.10056.1.S1_x_at--991--10051Chr03:6390485..6390509 (25 bp)
TAGTCCCGCGTCACGTGTCGTCGCA
LOC_Os03g12220
OsAffx.10056.1.S1_x_at--324--10531Chr03:6390519..6390543 (25 bp)
TTCACCAGCACGTGCGACGGCGGAG
LOC_Os03g12220
OsAffx.10056.1.S1_x_at--66--1632Chr03:6390560..6390584 (25 bp)
AGCGGCAGAGATGGTCCGGCGGCAA
LOC_Os03g12220
Target Sequence 
CGCCGGTGGTCAACGAGGGTTCGATTAGAGGCGGCGGGAGCATCTCCGGGGCTCGGGGAGCTCATTCCTGGGGTCGGATG
GGACGGAGGAGTCCCGAGTGAGGCCGGCGACGAGCGGCGGCTCCCCGGAACGGGCGGCAATCGCGACGAGACCATGCCGG
GCGGCGGCGGGGCTTGGGGCTTCGTCTACGCGCGTTCGGGAGGGCTACCGAGCTACCGCGCGAGCCAAAAGAGGGAGAGG
GCGAGCGAGAAGGGAGAACGGAGAGAGACACTACCGAGTCGAGACGGGCGCTGTGATGGGCGACCGACGGCGCGGGGCGA
GCTCTCCGGACTCGGGCCGGGGAAGGGGAAGGAGAGGGTGCCCGTAGTCCCGCGTCACGTGTCGTCGCACACACCAGCTT
CACCAGCACGTGCGACGGCGGAGGGAGGCGAGGTCGGCGAGCGGCAGAGATGGTCCGGCGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10056.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis