Browse Element(s) Details


OsAffx.3205.1.S1_at

Description tigr:9631.m01138
TID=OsAffx.3205.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1217010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12120Os.49206.1.S1_at11/113+6337210..6344710No apical meristem protein, expressed
LOC_Os03g12130OsAffx.25066.1.S1_at11/113+6347606..6348043hypothetical protein
LOC_Os03g12140Os.49195.1.S1_at11/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12140Os.55846.1.S1_at1/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12150Os.15087.1.S1_at11/113+6356529..6359358D-mannose binding lectin family protein, expressed
LOC_Os03g12160Os.16151.1.S1_at11/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12160Os.52160.1.S1_at1/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12170OsAffx.3205.1.S1_at10/113+6369228..6370796hypothetical protein
LOC_Os03g12180Os.34632.1.S1_at11/113+6371926..6374593MA3 domain-containing protein, putative, expressed
LOC_Os03g12190OsAffx.22269.1.S1_at11/113+6375080..6376387F-box domain containing protein
LOC_Os03g12200OsAffx.22268.1.S1_at10/113+6377687..6380420F-box domain containing protein
LOC_Os03g12210Os.43888.1.S1_at9/113+6382350..6386001expressed protein
LOC_Os03g12220OsAffx.10056.1.S1_x_at11/113+6389686..6390687retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3205.1.S1_at--100--5171Chr03:6370327..6370351 (25 bp)
GCAAGCGGCTCTTCCGCGGTTGCGT
LOC_Os03g12170
OsAffx.3205.1.S1_at--94--7391Chr03:6370298..6370322 (25 bp)
GTGAGGCACCTGCTAATCCCAGATG
LOC_Os03g12170
OsAffx.3205.1.S1_at--567--9091Chr03:6370288..6370312 (25 bp)
TGCTAATCCCAGATGCCGGTGACGA
LOC_Os03g12170
OsAffx.3205.1.S1_at--475--3431Chr03:6370279..6370303 (25 bp)
CAGATGCCGGTGACGAGCACATCGG
LOC_Os03g12170
OsAffx.3205.1.S1_at--88--7312Chr05:14308539..14308563 (25 bp)
GTGCTCGTTGCGGTTGTACCTCTAC
NONE
OsAffx.3205.1.S1_at--493--10812Chr05:14308552..14308575 (24 bp)
TTGTACCTCTACTTGACACTGGCGG
NONE
OsAffx.3205.1.S1_at--1013--9131Chr03:6370087..6370111 (25 bp)
TGCGTGTAGTCGACTGCCGGCACGA
LOC_Os03g12170
OsAffx.3205.1.S1_at--311--9291NONE
TCCGTCCTTTGTTGGCGAGCTCAAG
NONE
OsAffx.3205.1.S1_at--887--7291Chr03:6369328..6369352 (25 bp)
GTGCGATCCGTAAGCCCTGTTGTTC
LOC_Os03g12170
OsAffx.3205.1.S1_at--674--4271Chr03:6369313..6369337 (25 bp)
CCTGTTGTTCCCATGTCACCGATGA
LOC_Os03g12170
OsAffx.3205.1.S1_at--658--8971Chr03:6369288..6369312 (25 bp)
TGAACACGAGCTTATCCTCTCGGAG
LOC_Os03g12170
Target Sequence 
GCAAGCGGCTCTTCCGCGGTTGCGTCGCCGTGAGGCACCTGCTAATCCCAGATGCCGGTGACGAGCACATCGGACTCCGT
CGACGACGACGACAAGAAGCTCTGCCCGGGGGAGTGGTGCTCGTTGCGGTTGTACCTCTACTTGACACTGGCGGCGGTGC
CCACGGCGAGCGTGAGCTCCTGCTCCGCCGCCGCCTCCTCGTCGTCGTCGGTCTCCTCCGCGTCCTCCTCCTCGGGGCTC
TGCGTGTAGTCGACTGCCGGCACGAGCCACGGGCCACGGGCAGACCGCGAGCCACAGGCCTCCACCTCCGGCGATGCCGC
CTCGCCTCGCGCCTCCGTCCTTTGTTGGCGAGCTCAAGCTCCACCCGTGCGATCCGTAAGCCCTGTTGTTCCCATGTCAC
CGATGATGAACACGAGCTTATCCTCTCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis