Browse Element(s) Details


Os.49195.1.S1_at

Description gb:AK103138.1
DB_XREF= gi:32988347
TID=Os.49195.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.49195 (NCBI UniGene Cluster)
UG_TITLE=(indica cultivar-group) putative beta 1-3-glucanase (Bg) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120F09, full insert sequence.
FL= gb:AK103138.1 gb:AK119620.1 gb:AK109516.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1214011/11Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12090OsAffx.3204.1.S1_at10/113+6321465..6331026expressed protein
LOC_Os03g12100Os.54774.1.S1_x_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12100Os.54774.1.S1_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12110Os.37866.1.S1_at11/113+6333974..6336920Homocysteine S-methyltransferase 1, putative, expressed
LOC_Os03g12120Os.49206.1.S1_at11/113+6337210..6344710No apical meristem protein, expressed
LOC_Os03g12130OsAffx.25066.1.S1_at11/113+6347606..6348043hypothetical protein
LOC_Os03g12140Os.49195.1.S1_at11/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12140Os.55846.1.S1_at1/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12150Os.15087.1.S1_at11/113+6356529..6359358D-mannose binding lectin family protein, expressed
LOC_Os03g12160Os.16151.1.S1_at11/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12160Os.52160.1.S1_at1/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12170OsAffx.3205.1.S1_at10/113+6369228..6370796hypothetical protein
LOC_Os03g12180Os.34632.1.S1_at11/113+6371926..6374593MA3 domain-containing protein, putative, expressed
LOC_Os03g12190OsAffx.22269.1.S1_at11/113+6375080..6376387F-box domain containing protein
LOC_Os03g12200OsAffx.22268.1.S1_at10/113+6377687..6380420F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49195.1.S1_at--184--2611Chr03:6352057..6352081 (25 bp)
AACGCCTACTACCATGGCATGGGCA
LOC_Os03g12140
Os.49195.1.S1_at--1157--8091Chr03:6352091..6352115 (25 bp)
GGACGTGCTACTTCAGCGGTGTCGC
LOC_Os03g12140
Os.49195.1.S1_at--1114--3331Chr03:6352222..6352246 (25 bp)
CACGGGTCTTGCGTTTACGCTGGAA
LOC_Os03g12140
Os.49195.1.S1_at--204--2571Chr03:6352366..6352390 (25 bp)
AACGGGACGTCGTTGCTGAACGGCA
LOC_Os03g12140
Os.49195.1.S1_at--97--7211Chr03:6352501..6352525 (25 bp)
GTCGTCCTCCTGTTGTAGGCAGTGA
LOC_Os03g12140
Os.49195.1.S1_at--172--7851Chr03:6352535..6352559 (25 bp)
GGTTAGTTTAGTAGGCAAGGCAGCA
LOC_Os03g12140
Os.49195.1.S1_at--488--3211Chr03:6352550..6352574 (25 bp)
CAAGGCAGCAGAGTCCGTAGGAATT
LOC_Os03g12140
Os.49195.1.S1_at--801--9091Chr03:6352679..6352703 (25 bp)
TGCTCTAAGATGTTGTCTGGGAACT
LOC_Os03g12140
Os.49195.1.S1_at--850--3551Chr03:6352702..6352726 (25 bp)
CTTGGTATTGGGTGGTACGTTGCCT
LOC_Os03g12140
Os.49195.1.S1_at--902--3411Chr03:6352758..6352782 (25 bp)
CAGAAGGTGTCAGTGTTTGTGCGCT
LOC_Os03g12140
Os.49195.1.S1_at--877--7291Chr03:6352776..6352800 (25 bp)
GTGCGCTGACCACAATCAAAATCTT
LOC_Os03g12140
Target Sequence 
AACGCCTACTACCATGGCATGGGCATGGGCTCCGGGACGTGCTACTTCAGCGGTGTCGCCGTGATCACCACCACCGATCC
CAGCCACGGGTCTTGCGTTTACGCTGGAAGTGGTGGGAAGAACGGGACGTCGTTGCTGAACGGCACATCGCTGGCGCCGT
CGTCGAACTCCACGGCGGGGGACTCCGGCGCGCACCGGGCGATCGGGGACGTCTCGTCGTTCGTCCGCGCCGTCGTCGCG
GCGCTGCTGTTGAGCGTCGTCCTCCTGTTGTAGGCAGTGAGACGAGAGTGGTTAGTTTAGTAGGCAAGGCAGCAGAGTCC
GTAGGAATTCATGGGGGGATTCTTTTTTTGGTGTCGAGTGGGATTGGCCTCGGTGTTATGGGTGGGTGGTGATCATTGAG
AACGAACAAGATGATGTGCCTGNGTTCATCTGTTGCTCTAAGATGTTGTCTGGGAACTTGGTATTGGGTGGTACGTTGCC
TGGAAAAGGAAATTGGTACTAGGTTGTATTTGCAGAAGGTGTCAGTGTTTGTGCGCTGACCACAATCAAAATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis