Browse Element(s) Details


Os.16151.1.S1_at

Description gb:NM_187685.1
DB_XREF= gi:34902455
GEN=OJ1743A09.7
TID=Os.16151.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16151 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Unknown protein (OJ1743A09.7), mRNA.
PROD=Unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1216011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12110Os.37866.1.S1_at11/113+6333974..6336920Homocysteine S-methyltransferase 1, putative, expressed
LOC_Os03g12120Os.49206.1.S1_at11/113+6337210..6344710No apical meristem protein, expressed
LOC_Os03g12130OsAffx.25066.1.S1_at11/113+6347606..6348043hypothetical protein
LOC_Os03g12140Os.49195.1.S1_at11/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12140Os.55846.1.S1_at1/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12150Os.15087.1.S1_at11/113+6356529..6359358D-mannose binding lectin family protein, expressed
LOC_Os03g12160Os.16151.1.S1_at11/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12160Os.52160.1.S1_at1/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12170OsAffx.3205.1.S1_at10/113+6369228..6370796hypothetical protein
LOC_Os03g12180Os.34632.1.S1_at11/113+6371926..6374593MA3 domain-containing protein, putative, expressed
LOC_Os03g12190OsAffx.22269.1.S1_at11/113+6375080..6376387F-box domain containing protein
LOC_Os03g12200OsAffx.22268.1.S1_at10/113+6377687..6380420F-box domain containing protein
LOC_Os03g12210Os.43888.1.S1_at9/113+6382350..6386001expressed protein
LOC_Os03g12220OsAffx.10056.1.S1_x_at11/113+6389686..6390687retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16151.1.S1_at--542--10491Chr03:6361254..6361278 (25 bp)
TTAACCGCGTCTAATTTTCCACAAT
LOC_Os03g12160
Os.16151.1.S1_at--468--71Chr03:6361051..6361075 (25 bp)
ATTGCTTGAGAATTGTATCCATCCA
LOC_Os03g12160
Os.16151.1.S1_at--663--7611Chr03:6361015..6361039 (25 bp)
GGGAATATTTCTCTACTCGTTGTTG
LOC_Os03g12160
Os.16151.1.S1_at--987--9231Chr03:6360570..6360594 (25 bp)
TCCTTTGTTATTAGATCCCTCGCTG
LOC_Os03g12160
Os.16151.1.S1_at--932--3791Chr03:6360552..6360576 (25 bp)
CTCGCTGTTACTGAAGGGTCATTAT
LOC_Os03g12160
Os.16151.1.S1_at--417--2511Chr03:6360513..6360537 (25 bp)
AACATACATCAGTTTGGTTCCCTCC
LOC_Os03g12160
Os.16151.1.S1_at--813--4271Chr03:6360489..6360513 (25 bp)
CCTGATGATCCGGATACTCCATATT
LOC_Os03g12160
Os.16151.1.S1_at--274--10391Chr03:6360465..6360489 (25 bp)
TTTTCTCTGGATGCTTGTTGTTTTA
LOC_Os03g12160
Os.16151.1.S1_at--231--4871Chr03:6359939..6359963 (25 bp)
GCTAGTGAAGTTGTGTCCTACCAAA
LOC_Os03g12160
Os.16151.1.S1_at--723--8491Chr03:6359687..6359711 (25 bp)
TGGAAACTCAAGTGGTTCTCTGAAG
LOC_Os03g12160
Os.16151.1.S1_at--853--2351Chr03:6359633..6359657 (25 bp)
AAAGCTCTTTACTCTGTATCATCAT
LOC_Os03g12160
Target Sequence 
TTAACCGCGTCTAATTTTCCACAATTAACTAGTAGTATATCTTTGCAAAGCTGGGAGAAGGTCCAACTTAAATTGCTTGA
GAATTGTATCCATCCAAGTTTGGAAATGGGAATATTTCTCTACTCGTTGTTGATGTTTTGGAAGAATGATACTGAAGAAG
GATCCTTTGTTATTAGATCCCTCGCTGTTACTGAAGGGTCATTATTTGTGTGTATCGAGAACATACATCAGTTTGGTTCC
CTCCCTGATGATCCGGATACTCCATATTTTTCTCTGGATGCTTGTTGTTTTATCAACGATATTCAAGAAGTGCTAGTGAA
GTTGTGTCCTACCAAAATAAGCTGTGATATCATTGTTGTGGATCACTGTGACAAGAGATGTTTGACATTAGTTTTGGACA
ACCATGCACATGAAGGAAGATTTTGCAGTAACGGTAGCATTACAAATTCACAGAGCAAGCAACCAGATGAAATTTACACA
GTGCATACATGGAAACTCAAGTGGTTCTCTGAAGAAACAGTTGTGAAGTTCATTTCTTTACTTAAAGCTCTTTACTCTGT
ATCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis