Browse Element(s) Details


OsAffx.28970.4.S1_at

Description tigr:9635.m04889
TID=OsAffx.28970.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4844011/11hypothetical protein
LOC_Os02g329607/11hypothetical protein
LOC_Os03g184801/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48420OsAffx.28952.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.2.S1_at11/117+28955289..28959135expressed protein
LOC_Os07g48430Os.26730.1.S1_at11/117+28961334..28965586Nucleoside-triphosphatase, putative, expressed
LOC_Os07g48440OsAffx.28970.4.S1_at11/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_x_at3/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.3.S1_x_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48450Os.18595.1.A1_at11/117+28984109..28986260NAC-domain containing protein 18, putative, expressed
LOC_Os07g48460Os.27926.1.A1_s_at11/117+28991039..28993144expressed protein
LOC_Os07g48460Os.12186.2.S1_x_at2/117+28991039..28993144expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006508biological_processproteolysis
GO:0009536cellular_componentplastid
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28970.4.S1_at--986--1633Chr02:19578749..19578773 (25 bp)
AGCGAGCAGGTCGTGAAAATCAACG
LOC_Os02g32960
OsAffx.28970.4.S1_at--895--5512Chr05:18689848..18689870 (23 bp)
GAAAATCAACGATATCGCCATTGCT
NONE
OsAffx.28970.4.S1_at--8--3092Chr05:18689849..18689873 (25 bp)
AATCAACGATATCGCCATTGCTGCT
NONE
OsAffx.28970.4.S1_at--582--9331Chr07:28966689..28966713 (25 bp)
TCGCCATTGCTGCTAATGGGATCGA
LOC_Os07g48440
OsAffx.28970.4.S1_at--1063--3591Chr07:28966685..28966709 (25 bp)
CATTGCTGCTAATGGGATCGAGCTT
LOC_Os07g48440
OsAffx.28970.4.S1_at--569--7973Chr02:19578795..19578819 (25 bp)
GGATCGAGCTTGAGGTGCATTTGAT
LOC_Os02g32960
OsAffx.28970.4.S1_at--133--533Chr02:19578797..19578821 (25 bp)
ATCGAGCTTGAGGTGCATTTGATCA
LOC_Os02g32960
OsAffx.28970.4.S1_at--277--4073Chr02:19578799..19578823 (25 bp)
CGAGCTTGAGGTGCATTTGATCATA
LOC_Os02g32960
OsAffx.28970.4.S1_at--536--1554Chr05:18689884..18689908 (25 bp)
AGCTTGAGGTGCATTTGATCATATC
NONE
OsAffx.28970.4.S1_at--1087--10694Chr05:18689887..18689911 (25 bp)
TTGAGGTGCATTTGATCATATCAGA
NONE
OsAffx.28970.4.S1_at--537--7774Chr05:18689891..18689915 (25 bp)
GGTGCATTTGATCATATCAGATCAG
NONE
Target Sequence 
AGCGAGCAGGTCGTGAAAATCAACGATATCGCCATTGCTGCTAATGGGATCGAGCTTGAGGTGCATTTGATCATATCAGA
TCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28970.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis