Browse Element(s) Details


Os.16088.1.S1_x_at

Description gb:AK065098.1
DB_XREF= gi:32975116
TID=Os.16088.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001M18, full insert sequence.
FL= gb:AK065098.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4842011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48410Os.4796.1.S2_at11/117+28926985..28931273RNA recognition motif family protein, expressed
LOC_Os07g48410Os.4796.1.S1_at11/117+28926985..28931273RNA recognition motif family protein, expressed
LOC_Os07g48420OsAffx.28952.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.2.S1_at11/117+28955289..28959135expressed protein
LOC_Os07g48430Os.26730.1.S1_at11/117+28961334..28965586Nucleoside-triphosphatase, putative, expressed
LOC_Os07g48440OsAffx.28970.4.S1_at11/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_x_at3/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.3.S1_x_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48450Os.18595.1.A1_at11/117+28984109..28986260NAC-domain containing protein 18, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16088.1.S1_x_at--284--10191Chr07:28957443..28957467 (25 bp)
TTCATATGACATACAGCTGCCCGAT
LOC_Os07g48420
Os.16088.1.S1_x_at--986--4771Chr07:28957428..28957452 (25 bp)
GCTGCCCGATGAACATGTGCCAGAT
LOC_Os07g48420
Os.16088.1.S1_x_at--718--3651Chr07:28957381..28957405 (25 bp)
CTTCTTGGGCTATGCATTCGGGATA
LOC_Os07g48420
Os.16088.1.S1_x_at--575--9431Chr07:28957364..28957388 (25 bp)
TCGGGATACTATCAGTCCTGCACAG
LOC_Os07g48420
Os.16088.1.S1_x_at--816--7591Chr07:28957338..28957360 (23 bp)
GGGCATCTGCTGAATTCGAAAATCA
LOC_Os07g48420
Os.16088.1.S1_x_at--40--1571Chr07:28956971..28956995 (25 bp)
AGCTTATTTGCAACTTCCTTCTACC
LOC_Os07g48420
Os.16088.1.S1_x_at--409--6311Chr07:28956914..28956938 (25 bp)
GATGAGAATGTTTCCTTGCAGCAAA
LOC_Os07g48420
Os.16088.1.S1_x_at--170--491Chr07:28955538..28955559 (22 bp)
ATCGGGTTACGATTCCAACCATATG
LOC_Os07g48420
Os.16088.1.S1_x_at--354--8411Chr07:28955500..28955524 (25 bp)
GGCCGTTTGGAGATCATTCAGCATA
LOC_Os07g48420
Os.16088.1.S1_x_at--2--5091Chr07:28955366..28955390 (25 bp)
GCACCAATGTATCTAGGTTCAGCAT
LOC_Os07g48420
Os.16088.1.S1_x_at--684--6431Chr07:28955332..28955356 (25 bp)
GATCATTGACGCTGTTGTTGACCAT
LOC_Os07g48420
Target Sequence 
TTCATATGACATACAGCTGCCCGATGAACATGTGCCAGATGAACCATTTGAACCAATTAAGCCTTCTTGGGCTATGCATT
CGGGATACTATCAGTCCTGCACAGATGGGGCATCTGCTGAATTCGAAAATCATACTTTAAGCTCCAGTGAATTCAGTGGT
ATTGCAAGCTTATTTGCAACTTCCTTCTACCCTCAACAAACACAAATTTATGAGTGTCATGGAGATGAGAATGTTTCCTT
GCAGCAAAATTGGCAGTGCAACTGGAATGTGGTTTCTGAAAATGATTTCCAATCGGGTTACGATTCCAACCATATGAATG
GCTCCTTCTGGCCGTTTGGAGATCATTCAGCATAATACCACATAGTCTATATTGTTGTAATTTCACTCTTATCTTTTTTA
TGTACATTTCATTTAAATTTACCCGGCCAAATGTAAATGAAAAAAATATATATAAGAGGTTATGCACCAATGTATCTAGG
TTCAGCATATAATGTAAGATCATTGACGCTGTTGTTGACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16088.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis