Browse Element(s) Details


Os.26730.1.S1_at

Description gb:AK066262.1
DB_XREF= gi:32976280
TID=Os.26730.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26730 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059O11, full insert sequence.
FL= gb:AK066262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4843011/11Nucleoside-triphosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48420OsAffx.28952.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.2.S1_at11/117+28955289..28959135expressed protein
LOC_Os07g48430Os.26730.1.S1_at11/117+28961334..28965586Nucleoside-triphosphatase, putative, expressed
LOC_Os07g48440OsAffx.28970.4.S1_at11/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_x_at3/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.3.S1_x_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48450Os.18595.1.A1_at11/117+28984109..28986260NAC-domain containing protein 18, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009846biological_processpollen germination
GO:0004551molecular_functionnucleotide diphosphatase activity
GO:0005516molecular_functioncalmodulin binding
GO:0016787molecular_functionhydrolase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26730.1.S1_at--1065--2431Chr07:28964921..28964945 (25 bp)
AAAAGGCTGCCAAGCGTGCATGTAA
LOC_Os07g48430
Os.26730.1.S1_at--692--2391Chr07:28964949..28964973 (25 bp)
AAACTTGAAGGACGCCGAAGCTGCC
LOC_Os07g48430
Os.26730.1.S1_at--595--9191Chr07:28964970..28964994 (25 bp)
TGCCTACCCTGGTGTCCAAAAGGAT
LOC_Os07g48430
Os.26730.1.S1_at--841--7951Chr07:28965015..28965039 (25 bp)
GGATCTCGTTTACCAGTACACCTTA
LOC_Os07g48430
Os.26730.1.S1_at--478--1411Chr07:28965181..28965205 (25 bp)
AGAAAGTCCCTTACAGCAACGCGTT
LOC_Os07g48430
Os.26730.1.S1_at--914--8331Chr07:28965298..28965322 (25 bp)
GGCGTCATCGCCGTAAAGTTTTGGA
LOC_Os07g48430
Os.26730.1.S1_at--346--4531Chr07:28965357..28965381 (25 bp)
GCCCCAAGTGACCATTTTGTTACTG
LOC_Os07g48430
Os.26730.1.S1_at--281--2631Chr07:28965396..28965420 (25 bp)
AACCTGCTTCTATACAGTAGCCTGA
LOC_Os07g48430
Os.26730.1.S1_at--493--8891Chr07:28965424..28965448 (25 bp)
TGAGTGATACACAAGGACCCGCCAG
LOC_Os07g48430
Os.26730.1.S1_at--164--2771Chr07:28965512..28965536 (25 bp)
AAGACGAGCCTGTCATTCTTTTCTT
LOC_Os07g48430
Os.26730.1.S1_at--190--8851Chr07:28965536..28965560 (25 bp)
TGATCTATACTACTCCAGTTCTGTA
LOC_Os07g48430
Target Sequence 
AAAAGGCTGCCAAGCGTGCATGTAAGTTAAACTTGAAGGACGCCGAAGCTGCCTACCCTGGTGTCCAAAAGGATAACATT
CCATATATCTGCATGGATCTCGTTTACCAGTACACCTTACTTGTGGATGGATTTGGTGTTGGTTCTCACCAAGAGATGAC
CTTGGTAAAGAAAGTCCCTTACAGCAACGCGTTTGTGGAAGCAGCATGGCCACTGGGAAGTGCCATTGAGGTTGCATCTT
GATAGACAGACAGCAGAAAGTTCAGCAAGGGAGCTACGATCAGAGGGCGTCATCGCCGTAAAGTTTTGGATCTGGAGGGT
GTTCGCTTGCTCGGCGCTGCGCACGCCCCAAGTGACCATTTTGTTACTGAAATCGATTGATTTAACCTGCTTCTATACAG
TAGCCTGATAATGAGTGATACACAAGGACCCGCCAGCTTGCATAGTTGCATACTTGCATGCAAGGGGTATATACATTNTT
TTTTTGTACCATTGAAAGTAAGACGAGCCTGTCATTCTTTTCTTGATCTATACTACTCCAGTTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26730.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis