Browse Element(s) Details


Os.16088.2.S1_at

Description gb:AK103680.1
DB_XREF= gi:32988889
TID=Os.16088.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136D22, full insert sequence.
FL= gb:AK103680.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4842011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48410Os.4796.1.S2_at11/117+28926985..28931273RNA recognition motif family protein, expressed
LOC_Os07g48410Os.4796.1.S1_at11/117+28926985..28931273RNA recognition motif family protein, expressed
LOC_Os07g48420OsAffx.28952.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.2.S1_at11/117+28955289..28959135expressed protein
LOC_Os07g48430Os.26730.1.S1_at11/117+28961334..28965586Nucleoside-triphosphatase, putative, expressed
LOC_Os07g48440OsAffx.28970.4.S1_at11/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_x_at3/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.3.S1_x_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48450Os.18595.1.A1_at11/117+28984109..28986260NAC-domain containing protein 18, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16088.2.S1_at--94--5251Chr07:28955816..28955840 (25 bp)
GAATAATTCTCAGACTCCAGCAGAT
LOC_Os07g48420
Os.16088.2.S1_at--513--6151Chr07:28955787..28955811 (25 bp)
GAGGTTAACTCTGTCTTTATGGTAT
LOC_Os07g48420
Os.16088.2.S1_at--725--3071Chr07:28955749..28955773 (25 bp)
AATCAGCAATCTCAGTACCCTTGCT
LOC_Os07g48420
Os.16088.2.S1_at--168--6991Chr07:28955735..28955759 (25 bp)
GTACCCTTGCTAGACGATTTTAATG
LOC_Os07g48420
Os.16088.2.S1_at--127--6651Chr07:28955695..28955719 (25 bp)
GTTGTTTGTGCTTTGCTGGTATTGT
LOC_Os07g48420
Os.16088.2.S1_at--655--2411Chr07:28955654..28955678 (25 bp)
AAACAATCTTGTATGGTGCCCGCAT
LOC_Os07g48420
Os.16088.2.S1_at--670--7291Chr07:28955639..28955663 (25 bp)
GTGCCCGCATCACATTTTTATGGTT
LOC_Os07g48420
Os.16088.2.S1_at--367--7351Chr07:28955603..28955627 (25 bp)
GTGCAACTGTGCATGCGATGTCTCC
LOC_Os07g48420
Os.16088.2.S1_at--631--4051Chr07:28955588..28955612 (25 bp)
CGATGTCTCCATGTTGTCTTTTGAA
LOC_Os07g48420
Os.16088.2.S1_at--314--4291Chr07:28955550..28955574 (25 bp)
CCATTTTTATTTGCAGGGTTACGAT
LOC_Os07g48420
Os.16088.2.S1_at--1059--7392Chr12:8087995..8088225 (25 bp)
GTGATATCCAGTTTCTTTTTAACCT
NONE
Target Sequence 
GAATAATTCTCAGACTCCAGCAGATAAGTGAGGTTAACTCTGTCTTTATGGTATAGTTTTCTTAACAAATCAGCAATCTC
AGTACCCTTGCTAGACGATTTTAATGAGTGTTAATAGTTTGGTTGTTTGTGCTTTGCTGGTATTGTTGCTAGATTTCAAC
TGAAACAATCTTGTATGGTGCCCGCATCACATTTTTATGGTTGAAACATGAGTGTGCAACTGTGCATGCGATGTCTCCAT
GTTGTCTTTTGAACTGAAATATTTCTCCATTTTTATTTGCAGGGTTACGATTCCAACCATATGAATGGCTNCTTCTGGCC
GTTTGGAGATCATTCAGCATAATACCACATAGTCTATATTGTTGTAATTTCACTCTTATCTTTTTTATGTACATTTCATT
TAAATTTACCCGGCCAAATGTAAATGAAAAAAATATATATAAGAGGTTATGCACCAATGTATCTAGGTTCAGCATATAAT
GTAAGATCATTGACGCTGTTGTTGACCATAATTACTTCTTTTTATAGTGATATCCAGTTTCTTTTTAACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16088.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis