Browse Element(s) Details


Os.4796.1.S1_at

Description gb:AK111556.1
DB_XREF= gi:37988219
TID=Os.4796.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056L03, full insert sequence.
FL= gb:AK119893.1 gb:AK111514.1 gb:AK111556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4841011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48360Os.53598.1.S1_at11/117+28899821..28906992ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os07g48370Os.25298.1.S1_at11/117+28907333..28912400Glycosyl transferase family 8 protein, expressed
LOC_Os07g48380OsAffx.16764.1.S1_at10/117+28915950..28916511hypothetical protein
LOC_Os07g48390Os.56910.1.S1_at11/117+28917891..28919370expressed protein
LOC_Os07g48390Os.56910.1.S1_s_at11/117+28917891..28919370expressed protein
LOC_Os07g48390Os.5185.1.S1_at11/117+28917891..28919370expressed protein
LOC_Os07g48400NANA7+28920580..28921861transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g48410Os.4796.1.S2_at11/117+28926985..28931273RNA recognition motif family protein, expressed
LOC_Os07g48410Os.4796.1.S1_at11/117+28926985..28931273RNA recognition motif family protein, expressed
LOC_Os07g48420OsAffx.28952.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.2.S1_at11/117+28955289..28959135expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4796.1.S1_at--1003--1071Chr07:28928648..28928672 (25 bp)
AGGGAAGCGGCTTCCTTCTTGCTCA
LOC_Os07g48410
Os.4796.1.S1_at--426--2731Chr07:28928622..28928646 (25 bp)
AAGAAGGCGGTCAACGGAGCCGATA
LOC_Os07g48410
Os.4796.1.S1_at--899--931Chr07:28928594..28928618 (25 bp)
AGGAATCCACCGGAGAGTCCTCCAG
LOC_Os07g48410
Os.4796.1.S1_at--793--2851Chr07:28928349..28928373 (25 bp)
AAGTCCGCGGGATTTGCTCGCGATC
LOC_Os07g48410
Os.4796.1.S1_at--35--10311Chr07:28928323..28928347 (25 bp)
TTTCGCTCCCACTGAGGCGGAGATC
LOC_Os07g48410
Os.4796.1.S1_at--1073--1791Chr07:28928292..28928316 (25 bp)
ACCGCGTCGACTGGTTGTAGCGCCA
LOC_Os07g48410
Os.4796.1.S1_at--602--6971Chr07:28928276..28928300 (25 bp)
GTAGCGCCACCTATGTTGGCATCAA
LOC_Os07g48410
Os.4796.1.S1_at--76--5411Chr07:28928202..28928226 (25 bp)
GACATGCCCTCACCAAAACCTTATT
LOC_Os07g48410
Os.4796.1.S1_at--971--371Chr07:28928035..28928059 (25 bp)
ATCACGGCGCGATCGGAATGTAAAG
LOC_Os07g48410
Os.4796.1.S1_at--875--3071Chr07:28927990..28928013 (24 bp)
AATACTACTACTGCCTAATCCTAGA
LOC_Os07g48410
Os.4796.1.S1_at--934--4952Chr07:28927750..28927774 (25 bp)
GCATAGTGTTAGTTTCAGTCACCCC
LOC_Os07g48410
Target Sequence 
AGGGAAGCGGCTTCCTTCTTGCTCACAAGAAGGCGGTCAACGGAGCCGATAAGGAGGAATCCACCGGAGAGTCCTCCAGC
CCTAACACAGACAGTGACCAAAGTGTGGAGCATAATCTGCCGGACAGCCCGTTTGCGTCGCCGACCAAGTCCGCGGGATT
TGCTCGCGATCCTTTCGCTCCCACTGAGGCGGAGATCTCCGCCACCGCGTCGACTGGTTGTAGCGCCACCTATGTTGGCA
TCAACAATGGCGCCAGCAATGGCGGCACTAACCATCTCCTACCTTCTGCCTTGGACATGCCCTCACCAAAACCTTATTTC
TTCCCCATGTCCAGGCTGGCCTCCGATCACGGCGCGATCGGAATGTAAAGTTGTTCTGAATGGAAGTGAGTAATACTACT
ACTGCCTAATCCTAGAATACTAGCAGCAAAGAAAAAGAGAATAGTGGAATATAGGAAAAGAGTGGAGAAGTTGCAGCATA
GTGTTAGTTTCAGTCACCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis