Browse Element(s) Details


Os.56910.1.S1_at

Description gb:AK110569.1
DB_XREF= gi:32995778
TID=Os.56910.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-D09, full insert sequence.
FL= gb:AK110569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4839011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48350Os.19006.1.S1_a_at11/117+28891407..28899269expressed protein
LOC_Os07g48360Os.53598.1.S1_at11/117+28899821..28906992ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os07g48370Os.25298.1.S1_at11/117+28907333..28912400Glycosyl transferase family 8 protein, expressed
LOC_Os07g48380OsAffx.16764.1.S1_at10/117+28915950..28916511hypothetical protein
LOC_Os07g48390Os.56910.1.S1_at11/117+28917891..28919370expressed protein
LOC_Os07g48390Os.56910.1.S1_s_at11/117+28917891..28919370expressed protein
LOC_Os07g48390Os.5185.1.S1_at11/117+28917891..28919370expressed protein
LOC_Os07g48400NANA7+28920580..28921861transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g48410Os.4796.1.S2_at11/117+28926985..28931273RNA recognition motif family protein, expressed
LOC_Os07g48410Os.4796.1.S1_at11/117+28926985..28931273RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56910.1.S1_at--931--1851Chr07:28918639..28918663 (25 bp)
ACGACGGTGAACCTGCAGTTCACCA
LOC_Os07g48390
Os.56910.1.S1_at--812--5751Chr07:28918641..28918665 (25 bp)
GACGGTGAACCTGCAGTTCACCAAC
LOC_Os07g48390
Os.56910.1.S1_at--22--1231Chr07:28918655..28918679 (25 bp)
AGTTCACCAACATGTGCGGCATCTG
LOC_Os07g48390
Os.56910.1.S1_at--462--4691Chr07:28918670..28918694 (25 bp)
GCGGCATCTGCTACCCGTGGCCGTG
LOC_Os07g48390
Os.56910.1.S1_at--338--3471Chr07:28918735..28918759 (25 bp)
CAGTGGCCGCAGTGCGAAGCCCCGG
LOC_Os07g48390
Os.56910.1.S1_at--726--8351Chr07:28918761..28918785 (25 bp)
GGCGGCGTTGCCAGCGTTCGTCCCT
LOC_Os07g48390
Os.56910.1.S1_at--170--6711Chr07:28918822..28918846 (25 bp)
GTTCCGGCGCCGAAGTGGCCATGCG
LOC_Os07g48390
Os.56910.1.S1_at--512--1091Chr07:28918835..28918859 (25 bp)
AGTGGCCATGCGGAGGCCCCTCGTA
LOC_Os07g48390
Os.56910.1.S1_at--1016--6211Chr07:28918847..28918871 (25 bp)
GAGGCCCCTCGTACTGCGGTGGGTG
LOC_Os07g48390
Os.56910.1.S1_at--1009--4471Chr07:28918908..28918932 (25 bp)
GCCGATGCAGGCGATGTGCTGCCCT
LOC_Os07g48390
Os.56910.1.S1_at--851--4231Chr07:28918909..28918933 (25 bp)
CCGATGCAGGCGATGTGCTGCCCTG
LOC_Os07g48390
Target Sequence 
ACGACGGTGAACCTGCAGTTCACCAACATGTGCGGCATCTGCTACCCGTGGCCGTGCAGCGACCCCACCCACTGGGGCGC
CGGCGTCGTCCACCCGCAGTGGCCGCAGTGCGAAGCCCCGGCGGCGGCGTTGCCAGCGTTCGTCCCTGGCCACCACCACC
ACCAGCTCCCGCCATGGGGCGGCGTTCCGGCGCCGAAGTGGCCATGCGGAGGCCCCTCGTACTGCGGTGGGTGCGGCACC
TGCCGCGGCGGCGGGTGGCCGGCGGCGGCGCCGATGCAGGCGATGTGCTGCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis