Browse Element(s) Details


Os.19006.1.S1_a_at

Description gb:AK121650.1
DB_XREF= gi:37991273
TID=Os.19006.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033135I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060O15, full insert sequence.
FL= gb:AK103662.1 gb:AK121650.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4835011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48310Os.47332.1.S1_at11/117+28861864..28866934leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g48320Os.52112.1.S1_at11/117+28875588..28877720plant acid phosphatase family protein, expressed
LOC_Os07g48330OsAffx.16763.1.S1_at11/117+28880461..28884645Cytochrome P450 family protein, expressed
LOC_Os07g48340Os.14413.1.S1_at11/117+28887547..28890337Calcium-binding protein CAST, putative, expressed
LOC_Os07g48350Os.19006.1.S1_a_at11/117+28891407..28899269expressed protein
LOC_Os07g48360Os.53598.1.S1_at11/117+28899821..28906992ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os07g48370Os.25298.1.S1_at11/117+28907333..28912400Glycosyl transferase family 8 protein, expressed
LOC_Os07g48380OsAffx.16764.1.S1_at10/117+28915950..28916511hypothetical protein
LOC_Os07g48390Os.56910.1.S1_at11/117+28917891..28919370expressed protein
LOC_Os07g48390Os.56910.1.S1_s_at11/117+28917891..28919370expressed protein
LOC_Os07g48390Os.5185.1.S1_at11/117+28917891..28919370expressed protein
LOC_Os07g48400NANA7+28920580..28921861transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19006.1.S1_a_at--73--8631Chr07:28898672..28898696 (25 bp)
TGGGTTGTGACCATGGCACCTGGAA
LOC_Os07g48350
Os.19006.1.S1_a_at--517--271Chr07:28898700..28898724 (25 bp)
ATATGTATCGCGCTTTGTGTTCCTG
LOC_Os07g48350
Os.19006.1.S1_a_at--689--10611Chr07:28898719..28898743 (25 bp)
TTCCTGGTGGTGAAGTTTGTCCCGT
LOC_Os07g48350
Os.19006.1.S1_a_at--914--2791Chr07:28898779..28898803 (25 bp)
AAGATAGCGTCTGGGCTTCGGAGTT
LOC_Os07g48350
Os.19006.1.S1_a_at--818--5271Chr07:28898805..28898829 (25 bp)
GAATGAGCACGATCTTGCATTGGCT
LOC_Os07g48350
Os.19006.1.S1_a_at--897--9631Chr07:28898850..28898874 (25 bp)
TCAGGCAATCTCCACTGTAGTCGAC
LOC_Os07g48350
Os.19006.1.S1_a_at--948--6931Chr07:28898866..28898890 (25 bp)
GTAGTCGACACCTTGTTGTGATCTT
LOC_Os07g48350
Os.19006.1.S1_a_at--1074--7391Chr07:28898883..28898907 (25 bp)
GTGATCTTTGCCTCTTGACATTTCC
LOC_Os07g48350
Os.19006.1.S1_a_at--1067--171Chr07:28898902..28898926 (25 bp)
ATTTCCCACCCATTATCTGACATAG
LOC_Os07g48350
Os.19006.1.S1_a_at--938--4711Chr07:28899052..28899076 (25 bp)
GCTGGGTGCATTGCTAACGTTGCTA
LOC_Os07g48350
Os.19006.1.S1_a_at--325--9871Chr07:28899108..28899132 (25 bp)
TACAGAGGCCTTGCTCGACAACGTA
LOC_Os07g48350
Target Sequence 
TGGGTTGTGACCATGGCACCTGGAAGGCATATGTATCGCGCTTTGTGTTCCTGGTGGTGAAGTTTGTCCCGTCATGGTTG
CGGGACATTAAACTGGACACGCTAAAGAAGATAGCGTCTGGGCTTCGGAGTTGGAATGAGCACGATCTTGCATTGGCTNT
ACTTGAGCGAGGAGGACCTCAGGCAATCTCCACTGTAGTCGACACCTTGTTGTGATCTTTGCCTCTTGACATTTCCCACC
CATTATCTGACATAGGAGTTTTTGTAATCACATTTGAGGCCAGGACTTGTGTAGAGATGTCTTCTGGTTCAGGATTTCTC
AGTCGAGCTATCTAAAATTTCTGAATTCTGTCAGCGGAGAGATGCTAGCTAATCTTGTTTGCTGGGTGCATTGCTAACGT
TGCTATTTTCAGGGTAGCATTGTGAACCCAAAATCATACAGAGGCCTTGCTCGACAACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19006.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis