Browse Element(s) Details


OsAffx.16764.1.S1_at

Description tigr:9635.m04881
TID=OsAffx.16764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4838010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48350Os.19006.1.S1_a_at11/117+28891407..28899269expressed protein
LOC_Os07g48360Os.53598.1.S1_at11/117+28899821..28906992ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os07g48370Os.25298.1.S1_at11/117+28907333..28912400Glycosyl transferase family 8 protein, expressed
LOC_Os07g48380OsAffx.16764.1.S1_at10/117+28915950..28916511hypothetical protein
LOC_Os07g48390Os.56910.1.S1_at11/117+28917891..28919370expressed protein
LOC_Os07g48390Os.56910.1.S1_s_at11/117+28917891..28919370expressed protein
LOC_Os07g48390Os.5185.1.S1_at11/117+28917891..28919370expressed protein
LOC_Os07g48400NANA7+28920580..28921861transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g48410Os.4796.1.S2_at11/117+28926985..28931273RNA recognition motif family protein, expressed
LOC_Os07g48410Os.4796.1.S1_at11/117+28926985..28931273RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16764.1.S1_at--499--6911Chr07:28915982..28916006 (25 bp)
GTATGCCAGCGAAAATACCAAGCAG
LOC_Os07g48380
OsAffx.16764.1.S1_at--66--311Chr07:28915996..28916020 (25 bp)
ATACCAAGCAGATCGAAGCCCACGG
LOC_Os07g48380
OsAffx.16764.1.S1_at--492--5411Chr07:28916010..28916034 (25 bp)
GAAGCCCACGGTTTTGAGTTGACTC
LOC_Os07g48380
OsAffx.16764.1.S1_at--1154--6051NONE
GAGTTGACTCCAGTTGACTCAGGGA
NONE
OsAffx.16764.1.S1_at--971--5691Chr07:28916319..28916338 (20 bp)
GACTCAGGGAGCAGGCAACAATTAA
LOC_Os07g48380
OsAffx.16764.1.S1_at--356--2451Chr07:28916330..28916354 (25 bp)
AACAATTAAGTCTCACGTCACGCGC
LOC_Os07g48380
OsAffx.16764.1.S1_at--885--3351Chr07:28916348..28916372 (25 bp)
CACGCGCTGCGTATGGTACAAACCA
LOC_Os07g48380
OsAffx.16764.1.S1_at--342--3511Chr07:28916371..28916395 (25 bp)
CATGGTGAGAGTCCGAGCACTGCAC
LOC_Os07g48380
OsAffx.16764.1.S1_at--235--1971Chr07:28916389..28916413 (25 bp)
ACTGCACGGTCGGATTGGGACCCAT
LOC_Os07g48380
OsAffx.16764.1.S1_at--334--511Chr07:28916419..28916443 (25 bp)
ATCGTCGCCGGCAATCTCGGCAGAC
LOC_Os07g48380
OsAffx.16764.1.S1_at--587--1411Chr07:28916440..28916464 (25 bp)
AGACATCCGCAACTAACTATTCCTC
LOC_Os07g48380
Target Sequence 
GTATGCCAGCGAAAATACCAAGCAGATCGAAGCCCACGGTTTTGAGTTGACTCCAGTTGACTCAGGGAGCAGGCAACAAT
TAAGTCTCACGTCACGCGCTGCGTATGGTACAAACCATGGTGAGAGTCCGAGCACTGCACGGTCGGATTGGGACCCATCG
GCCATCGTCGCCGGCAATCTCGGCAGACATCCGCAACTAACTATTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis