Browse Element(s) Details


Os.53598.1.S1_at

Description gb:AK073504.1
DB_XREF= gi:32983527
TID=Os.53598.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043G23, full insert sequence.
FL= gb:AK073504.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4836011/11ATP-dependent DNA helicase, RecQ family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48320Os.52112.1.S1_at11/117+28875588..28877720plant acid phosphatase family protein, expressed
LOC_Os07g48330OsAffx.16763.1.S1_at11/117+28880461..28884645Cytochrome P450 family protein, expressed
LOC_Os07g48340Os.14413.1.S1_at11/117+28887547..28890337Calcium-binding protein CAST, putative, expressed
LOC_Os07g48350Os.19006.1.S1_a_at11/117+28891407..28899269expressed protein
LOC_Os07g48360Os.53598.1.S1_at11/117+28899821..28906992ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os07g48370Os.25298.1.S1_at11/117+28907333..28912400Glycosyl transferase family 8 protein, expressed
LOC_Os07g48380OsAffx.16764.1.S1_at10/117+28915950..28916511hypothetical protein
LOC_Os07g48390Os.56910.1.S1_at11/117+28917891..28919370expressed protein
LOC_Os07g48390Os.56910.1.S1_s_at11/117+28917891..28919370expressed protein
LOC_Os07g48390Os.5185.1.S1_at11/117+28917891..28919370expressed protein
LOC_Os07g48400NANA7+28920580..28921861transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g48410Os.4796.1.S2_at11/117+28926985..28931273RNA recognition motif family protein, expressed
LOC_Os07g48410Os.4796.1.S1_at11/117+28926985..28931273RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000724biological_processdouble-strand break repair via homologous recombination
GO:0006974biological_processresponse to DNA damage stimulus
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53598.1.S1_at--516--7751Chr07:28906400..28906424 (25 bp)
GGTGTAAATTCTACTGCCGCAATCG
LOC_Os07g48360
Os.53598.1.S1_at--1032--9171Chr07:28906414..28906438 (25 bp)
TGCCGCAATCGGTGCCACAGAGGAT
LOC_Os07g48360
Os.53598.1.S1_at--733--6631Chr07:28906706..28906730 (25 bp)
GTTGTCAATGCTAGTAACCCCATAT
LOC_Os07g48360
Os.53598.1.S1_at--642--7051Chr07:28906777..28906801 (25 bp)
GTAATGAGTGTAGGCTTCTTTCCCT
LOC_Os07g48360
Os.53598.1.S1_at--317--10571Chr07:28906792..28906816 (25 bp)
TTCTTTCCCTCTTTATCCGTATGAA
LOC_Os07g48360
Os.53598.1.S1_at--592--5531Chr07:28906814..28906838 (25 bp)
GAAAAATTCACCTGTTCATCACTAA
LOC_Os07g48360
Os.53598.1.S1_at--773--5531Chr07:28906886..28906910 (25 bp)
GAAACTAGTGCCGTTTGGCCTTGAA
LOC_Os07g48360
Os.53598.1.S1_at--628--7951Chr07:28906911..28906935 (25 bp)
GGATCATCATATCCAGTGACCCTGA
LOC_Os07g48360
Os.53598.1.S1_at--500--4351Chr07:28906923..28906947 (25 bp)
CCAGTGACCCTGATTCGTTGTAGAA
LOC_Os07g48360
Os.53598.1.S1_at--822--2731Chr07:28906946..28906970 (25 bp)
AAGAATCAGAGTCTGCTCCTAGCCT
LOC_Os07g48360
Os.53598.1.S1_at--417--9491Chr07:28906957..28906981 (25 bp)
TCTGCTCCTAGCCTCAAATATGATC
LOC_Os07g48360
Target Sequence 
GGTGTAAATTCTACTGCCGCAATCGGTGCCACAGAGGATGCAATACTAGAACTGGTTGAAGGACGCAATGGGGTTTCGTT
GGAGGATGTTGTCAAGCACTTCAATGGGTCGAAAAGAGAATGTGTCGTCGAGATGTTGGACAATCTGGAAGGCAATTTTC
TGGTGTACAAGAAGAATGGCTGCTACATGATTATGTGAAATTAAAGATCTGAAGGAATGTTACCAGTTGGTTGTCAATGC
TAGTAACCCCATATCTAGGAACATATACGGTCTCAAATGATGTATATATAAAATTTAGTGGTAATGAGTGTAGGCTTCTT
TCCCTCTTTATCCGTATGAAAAATTCACCTGTTCATCACTAACAACTGATCTTTAGTTCATTCAGTTTTTTCTGCTTGTT
CAGAGTTTAGAAACTAGTGCCGTTTGGCCTTGAAGGATCATCATATCCAGTGACCCTGATTCGTTGTAGAAGAATCAGAG
TCTGCTCCTAGCCTCAAATATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis