Browse Element(s) Details


Os.14413.1.S1_at

Description gb:AK062850.1
DB_XREF= gi:32972868
TID=Os.14413.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-A02, full insert sequence.
FL= gb:AK062850.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4834011/11Calcium-binding protein CAST, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48310Os.47332.1.S1_at11/117+28861864..28866934leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g48320Os.52112.1.S1_at11/117+28875588..28877720plant acid phosphatase family protein, expressed
LOC_Os07g48330OsAffx.16763.1.S1_at11/117+28880461..28884645Cytochrome P450 family protein, expressed
LOC_Os07g48340Os.14413.1.S1_at11/117+28887547..28890337Calcium-binding protein CAST, putative, expressed
LOC_Os07g48350Os.19006.1.S1_a_at11/117+28891407..28899269expressed protein
LOC_Os07g48360Os.53598.1.S1_at11/117+28899821..28906992ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os07g48370Os.25298.1.S1_at11/117+28907333..28912400Glycosyl transferase family 8 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14413.1.S1_at--283--8271Chr07:28887867..28887891 (25 bp)
GGCTCCGGTTCGAGGACTTCGAGTC
LOC_Os07g48340
Os.14413.1.S1_at--200--10671Chr07:28888200..28888224 (25 bp)
TTCCATCCAGGGTAGCCATGGCATC
LOC_Os07g48340
Os.14413.1.S1_at--1000--1731Chr07:28890181..28890200 (20 bp)
ACCTAGTCAACGTTCTTATCGGCGG
LOC_Os07g48340
Os.14413.1.S1_at--140--8151Chr07:28890213..28890237 (25 bp)
GGACAACGTGTTAATCATCCATTAG
LOC_Os07g48340
Os.14413.1.S1_at--641--151Chr07:28890233..28890257 (25 bp)
ATTAGCAGCTGGTCTTTGCATCGTG
LOC_Os07g48340
Os.14413.1.S1_at--1010--3671Chr07:28890246..28890270 (25 bp)
CTTTGCATCGTGTGATGACCATCAT
LOC_Os07g48340
Os.14413.1.S1_at--167--6311Chr07:28890259..28890283 (25 bp)
GATGACCATCATTTCTCATTGAACG
LOC_Os07g48340
Os.14413.1.S1_at--1152--172Chr08:16090458..16090810 (25 bp)
ATTTCTCATTGAACGAGTGACCAAC
NONE
Os.14413.1.S1_at--417--6111Chr07:28890283..28890307 (25 bp)
GAGTGACCAACTCGATGATTCTGTC
LOC_Os07g48340
Os.14413.1.S1_at--599--6291Chr07:28890296..28890320 (25 bp)
GATGATTCTGTCAGTCCCAGTGAGC
LOC_Os07g48340
Os.14413.1.S1_at--597--3451Chr07:28890307..28890331 (25 bp)
CAGTCCCAGTGAGCGTGATTGTTTT
LOC_Os07g48340
Target Sequence 
GGCTCCGGTTCGAGGACTTCGAGTCCCTCCACCGCGCCCTCGGCGACGCGCTCTTCGGCTCGCTGGACGTCCCCGAGGAC
GGCGGCGGCGGCGGCGGCGGCGACGAGGAGATGAAGGAGGCGTTCAAGGTGTTCGACGTGGATGGCGACGGGTTCATCTC
CGCCTCCGAGCTGCAGGAGGTGCTGAAGAAGCTCGGGATGCCGGAGGCCGGCAGCCTGGCCNACGTGCGGGAGATGATCT
GCNACGTCGACCGCGACAGCGACGGCCGCGTCGACNTCGGCGAGTTCAAGTGCATGATGCAGGNGATCACCGTCTTTGGC
GCCTGACCACTTCTTCCATCCAGGGTAGCCATGGCATCCGCTCACCCTCACCTAGTCAACGTTCTTATCGGCGGGGTTAC
AAGGAAGGACAACGTGTTAATCATCCATTAGCAGCTGGTCTTTGCATCGTGTGATGACCATCATTTCTCATTGAACGAGT
GACCAACTCGATGATTCTGTCAGTCCCAGTGAGCGTGATTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14413.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis