Browse Element(s) Details


Os.52112.1.S1_at

Description gb:AK064745.1
DB_XREF= gi:32974763
TID=Os.52112.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E04, full insert sequence.
FL= gb:AK064745.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4832011/11plant acid phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48280Os.15284.1.S1_at11/117+28847181..28850637expressed protein
LOC_Os07g48290Os.11068.3.S1_at9/117+28854206..28857841Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os07g48300OsAffx.28951.1.S1_at11/117+28857334..28861514Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os07g48300Os.17977.1.S1_s_at10/117+28857334..28861514Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os07g48310Os.47332.1.S1_at11/117+28861864..28866934leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g48320Os.52112.1.S1_at11/117+28875588..28877720plant acid phosphatase family protein, expressed
LOC_Os07g48330OsAffx.16763.1.S1_at11/117+28880461..28884645Cytochrome P450 family protein, expressed
LOC_Os07g48340Os.14413.1.S1_at11/117+28887547..28890337Calcium-binding protein CAST, putative, expressed
LOC_Os07g48350Os.19006.1.S1_a_at11/117+28891407..28899269expressed protein
LOC_Os07g48360Os.53598.1.S1_at11/117+28899821..28906992ATP-dependent DNA helicase, RecQ family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003993molecular_functionacid phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52112.1.S1_at--380--4291Chr07:28875914..28875938 (25 bp)
CCTCTTCTACTACCAGGCAAAGCAA
LOC_Os07g48320
Os.52112.1.S1_at--254--4631Chr07:28876318..28876342 (25 bp)
GCGTATGATCCGGTGGCGTTCAAGA
LOC_Os07g48320
Os.52112.1.S1_at--267--1011Chr07:28876413..28876437 (25 bp)
AGGATTCAGAGTCTTCATCCTCTCC
LOC_Os07g48320
Os.52112.1.S1_at--331--8311Chr07:28876501..28876523 (23 bp)
GGCTACGACCGGCTCATCATGAGAA
LOC_Os07g48320
Os.52112.1.S1_at--619--311Chr07:28877529..28877553 (25 bp)
ATACGCGGCAATGTGGGTGACCAGT
LOC_Os07g48320
Os.52112.1.S1_at--395--4611Chr07:28877581..28877605 (25 bp)
GCGACCGTGTCTTCAAAGTGCCCAA
LOC_Os07g48320
Os.52112.1.S1_at--388--1091Chr07:28877597..28877621 (25 bp)
AGTGCCCAACCCAATGTACTTTGTT
LOC_Os07g48320
Os.52112.1.S1_at--584--9751Chr07:28877628..28877652 (25 bp)
TAATATGATACTCTAATCGCCCATC
LOC_Os07g48320
Os.52112.1.S1_at--381--3051Chr07:28877642..28877666 (25 bp)
AATCGCCCATCAAACATGTGTTCGC
LOC_Os07g48320
Os.52112.1.S1_at--47--791Chr07:28877657..28877681 (25 bp)
ATGTGTTCGCACATACGCACTTCGT
LOC_Os07g48320
Os.52112.1.S1_at--487--9951Chr07:28877670..28877694 (25 bp)
TACGCACTTCGTTACACGGAGTATA
LOC_Os07g48320
Target Sequence 
CCTCTTCTACTACCAGGCAAAGCAATTCGGGGCGTATGATCCGGTGGCGTTCAAGAAGTGGGCGAGCAAGGCGATCTGCC
CGGGGGTACCTGGCATGGCGCAGCTGTTCCAGATGCTCAGAGGCAGAGGATTCAGAGTCTTCATCCTCTCCGGCCGAGAC
CAGCAGACTCTCGCCTCCAGCACCGCCGCCAACCTCGCCGCGGCCGGCTTCGCCGGCTACGACCGGCTCATCATGAGAAG
CGCGGAGTACCGGGGAATGAGCGCGGTGGTGTTCAAGTCGGCGATGAGAATGCAGCTGATGGAGGAGGGGTACAGGATAC
GCGGCAATGTGGGTGACCAGTGGAGCGATCTGCAGGGTGACTTCGTCGGCGACCGTGTCTTCAAAGTGCCCAACCCAATG
TACTTTGTTCCATGATAATATGATACTCTAATCGCCCATCAAACATGTGTTCGCACATACGCACTTCGTTACACGGAGTA
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis