Browse Element(s) Details


Os.11068.3.S1_at

Description gb:AK066191.1
DB_XREF= gi:32976209
TID=Os.11068.3
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415C01.11 (P0415C01.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013051C07, full insert sequence.
FL= gb:AK062218.1 gb:AK066191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g482909/11Serine/threonine-protein kinase AtPK19, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48260Os.11321.1.S1_at11/117+28827100..28830705WRKY DNA binding domain containing protein, expressed
LOC_Os07g48270Os.15665.1.S1_at11/117+28830923..28833032Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g48280Os.15284.1.S1_at11/117+28847181..28850637expressed protein
LOC_Os07g48290Os.11068.3.S1_at9/117+28854206..28857841Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os07g48300OsAffx.28951.1.S1_at11/117+28857334..28861514Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os07g48300Os.17977.1.S1_s_at10/117+28857334..28861514Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os07g48310Os.47332.1.S1_at11/117+28861864..28866934leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g48320Os.52112.1.S1_at11/117+28875588..28877720plant acid phosphatase family protein, expressed
LOC_Os07g48330OsAffx.16763.1.S1_at11/117+28880461..28884645Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009651biological_processresponse to salt stress
GO:0045860biological_processpositive regulation of protein kinase activity
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004676molecular_function3-phosphoinositide-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0035091molecular_functionphosphoinositide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11068.3.S1_at--747--1591Chr07:28857182..28857206 (25 bp)
AGCTGAAGCTTCCATCGTTTTTGTC
LOC_Os07g48290
Os.11068.3.S1_at--435--3551Chr07:28857194..28857218 (25 bp)
CATCGTTTTTGTCCAGTGAAGCTCA
LOC_Os07g48290
Os.11068.3.S1_at--742--1111Chr07:28857208..28857232 (25 bp)
AGTGAAGCTCATTCCCTCTTGAAAG
LOC_Os07g48290
Os.11068.3.S1_at--946--91Chr07:28857218..28857331 (25 bp)
ATTCCCTCTTGAAAGGACTGCTCCA
LOC_Os07g48290
Os.11068.3.S1_at--590--2291Chr07:28857383..28857407 (25 bp)
AAAGAGGCACAAATGGCTCAAACCG
LOC_Os07g48290
Os.11068.3.S1_at--798--1551Chr07:28857447..28857471 (25 bp)
AGCTTCCGACCCAACGTGAGCGGGC
LOC_Os07g48290
Os.11068.3.S1_at--896--8771Chr07:28857570..28857594 (25 bp)
TTCGCCGGGTTCACCTACGTCAGGC
LOC_Os07g48290
Os.11068.3.S1_at--1041--8311Chr07:28857596..28857620 (25 bp)
GGCTCCGTTCCTCCAGGATGTCAAG
LOC_Os07g48290
Os.11068.3.S1_at--1143--6491Chr07:28857790..28857814 (25 bp)
GATATGATCCATTTGCTCAGACCCT
LOC_Os07g48290
Os.11068.3.S1_at--473--4831NONE
GCTCAGACCCTGAAAATGATACCCA
NONE
Os.11068.3.S1_at--1064--2991NONE
AATGATACCCAATTTGCCCTCACAA
NONE
Target Sequence 
AGCTGAAGCTTCCATCGTTTTTGTCCAGTGAAGCTCATTCCCTCTTGAAAGGACTGCTCCACAAAGAAGGTGGCAAGCGG
CTAGGAAGCGGTCCGGGCGGCAGCGATGAGATAAAGAGGCACAAATGGCTCAAACCGATCAACTGGAGGAAGCTGGAGGC
CCGGCAGATCCAGCCGAGCTTCCGACCCAACGTGAGCGGGCTCACCTGCATCGCCAACTTCGACGAGTGCTGGACCAGCA
TGCCGGTGCTGGACTCGCCGGTGGCCACCCCTGTCGCCGGCGGCGCCGGCCACAGCAGCTTCGCCGGGTTCACCTACGTC
AGGCCGGCTCCGTTCCTCCAGGATGTCAAGCCTCCCTCTTCCTCTAGGCTGAAAGACTAGCTAGCAGCCAGTGCGAGTGA
AGAAACGGATGAACCAAGAGCAAGGGGAAAGAGGCGAAGGGTAGGAAGTTACTACTAAAATATCTGTAAAAGGACAACTG
GTCCATGTGAATGCACTTCCGGAGCTAATCTACCCAGGAGATATGATCCATTTGCTCAGACCCTGAAAATGATACCCAAT
TTGCCCTCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11068.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis