Browse Element(s) Details


Os.11321.1.S1_at

Description gb:AK110900.1
DB_XREF= gi:32996109
TID=Os.11321.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11321 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-B01, full insert sequence.
FL= gb:AK110900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4826011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48229Os.26706.1.S1_at10/117+28807843..28818077Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os07g48250OsAffx.16762.1.S1_at10/117+28822176..28823381hypothetical protein
LOC_Os07g48260Os.11321.1.S1_at11/117+28827100..28830705WRKY DNA binding domain containing protein, expressed
LOC_Os07g48270Os.15665.1.S1_at11/117+28830923..28833032Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g48280Os.15284.1.S1_at11/117+28847181..28850637expressed protein
LOC_Os07g48290Os.11068.3.S1_at9/117+28854206..28857841Serine/threonine-protein kinase AtPK19, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005730cellular_componentnucleolus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11321.1.S1_at--911--9911Chr07:28827645..28827669 (25 bp)
TACTGTCCTCGGAGTGCGCCAGCGA
LOC_Os07g48260
Os.11321.1.S1_at--1151--5751Chr07:28827554..28827578 (25 bp)
GACGTCGATCGTGGGTTCAGCGCCT
LOC_Os07g48260
Os.11321.1.S1_at--341--3971Chr07:28827528..28827552 (25 bp)
CGGATTACGACTGGCCGTCAGGGCT
LOC_Os07g48260
Os.11321.1.S1_at--662--1511Chr07:28827463..28827487 (25 bp)
AGCAGCCTCGGGTTCATGACTGGCT
LOC_Os07g48260
Os.11321.1.S1_at--239--691Chr07:28827448..28827472 (25 bp)
ATGACTGGCTCCTTTGGGAATCTTC
LOC_Os07g48260
Os.11321.1.S1_at--62--5671Chr07:28827409..28827433 (25 bp)
GACATGTTTGGCTTCGATCCTTAAC
LOC_Os07g48260
Os.11321.1.S1_at--620--7551Chr07:28827382..28827406 (25 bp)
GGGCTGTGCATGCATACATTCTTGC
LOC_Os07g48260
Os.11321.1.S1_at--747--2071Chr07:28827367..28827391 (25 bp)
ACATTCTTGCCATGCTAATTATTGC
LOC_Os07g48260
Os.11321.1.S1_at--1035--2451Chr07:28827322..28827346 (25 bp)
AACAAGTCCGCTATTTGCATGCAGA
LOC_Os07g48260
Os.11321.1.S1_at--703--2111Chr07:28827233..28827257 (25 bp)
ACATGTGTGTACTGCTATTGGAGGA
LOC_Os07g48260
Os.11321.1.S1_at--753--6651Chr07:28827168..28827192 (25 bp)
GTTGATCGCTGTACTAGTGAGTTGT
LOC_Os07g48260
Target Sequence 
TACTGTCCTCGGAGTGCGCCAGCGAGGCGGCGGCGCTCAGCAGCAGCCTGCCGCTCTCCGCCGTGGTGGGATCGGCGGTG
ACAACGCCGTCGACGTCGATCGTGGGTTCAGCGCCTGCGGATTACGACTGGCCGTCAGGGCTCGCCGGAGGTGACATGGC
CGGCAGCTTCCCGTCCTCTCCCAGCAGCCTCGGGTTCATGACTGGCTCCTTTGGGAATCTTCCTGGGGATGACGACGACA
TGTTTGGCTTCGATCCTTAACAAGGGCTGTGCATGCATACATTCTTGCCATGCTAATTATTGCTACTACTAATATTCAAG
AAAAACAAGTCCGCTATTTGCATGCAGAAGTGTATGCATGCATGCATAATACTATTGCTGTGAGGCTATAGCAAATTAGC
AATACTTGTAGTACATGTGTGTACTGCTATTGGAGGAAATCCAATATATATACGGTACGTAGTAAATATGTGTATTAGTT
GATCGCTGTACTAGTGAGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis