Browse Element(s) Details


Os.15284.1.S1_at

Description gb:AK059307.1
DB_XREF= gi:32969325
TID=Os.15284.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-G02, full insert sequence.
FL= gb:AK059307.1 gb:AK103060.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4828011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48250OsAffx.16762.1.S1_at10/117+28822176..28823381hypothetical protein
LOC_Os07g48260Os.11321.1.S1_at11/117+28827100..28830705WRKY DNA binding domain containing protein, expressed
LOC_Os07g48270Os.15665.1.S1_at11/117+28830923..28833032Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g48280Os.15284.1.S1_at11/117+28847181..28850637expressed protein
LOC_Os07g48290Os.11068.3.S1_at9/117+28854206..28857841Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os07g48300OsAffx.28951.1.S1_at11/117+28857334..28861514Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os07g48300Os.17977.1.S1_s_at10/117+28857334..28861514Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os07g48310Os.47332.1.S1_at11/117+28861864..28866934leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g48320Os.52112.1.S1_at11/117+28875588..28877720plant acid phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15284.1.S1_at--872--1931Chr07:28847656..28847680 (25 bp)
ACGGCTCGGCGAGCGACCTGCTGTT
LOC_Os07g48280
Os.15284.1.S1_at--148--1511Chr07:28847626..28847650 (25 bp)
AGCACTCGCCTGACCTGTACGAGAG
LOC_Os07g48280
Os.15284.1.S1_at--58--2311Chr07:28847549..28847573 (25 bp)
AAAGGCGTCTGCGTCGACCTCGACG
LOC_Os07g48280
Os.15284.1.S1_at--282--8391Chr07:28847516..28847540 (25 bp)
GGCGACGATGACTCAGACGAGGATT
LOC_Os07g48280
Os.15284.1.S1_at--1076--8051Chr07:28847405..28847429 (25 bp)
GGAGCAATCAGGATCAAGTCATAGT
LOC_Os07g48280
Os.15284.1.S1_at--887--5611Chr07:28847340..28847364 (25 bp)
GACAGAATTTTCAGTCGTTGGAATT
LOC_Os07g48280
Os.15284.1.S1_at--958--3591Chr07:28847295..28847319 (25 bp)
CATTCGGATTCATTTAGGTAGGTTT
LOC_Os07g48280
Os.15284.1.S1_at--470--7851Chr07:28847279..28847303 (25 bp)
GGTAGGTTTCATATTGGTGGATCAA
LOC_Os07g48280
Os.15284.1.S1_at--872--8771Chr07:28847245..28847269 (25 bp)
TGTTTTGTTCATTTTCGGGTGTAAT
LOC_Os07g48280
Os.15284.1.S1_at--378--9431Chr07:28847231..28847255 (25 bp)
TCGGGTGTAATGGTGCTGCATCTAA
LOC_Os07g48280
Os.15284.1.S1_at--261--331Chr07:28847200..28847224 (25 bp)
ATACAACACTTTACGATCCCGGTGA
LOC_Os07g48280
Target Sequence 
ACGGCTCGGCGAGCGACCTGCTGTTCCGGCAGCACTCGCCTGACCTGTACGAGAGCTTCTCCGAGAGGACGACGCCGGAG
GCCGCCGCGCTGTACGACCGGAAAGGGNAAAGGCGTCTGCGTCGACCTCGACGACGACGGCGGCGACGATGACTCAGACG
AGGATTGCAGCGGCGCGCTGAAGAGGTCGAGGCTGAGAGGGTCCGGTTGGCCATTGCCGGGGATACTCAACAGCAAGGGG
ACGACTGGAATGGGAGCAATCAGGATCAAGTCATAGTAGTGTAGAGAACTAGAGATAGATTCAGGTGCTGGAATTTTGAC
AGAATTTTCAGTCGTTGGAATTCTTATAGGTAGAGTGAATTTCATTCGGATTCATTTAGGTAGGTTTCATATTGGTGGAT
CAACAGGTTGTTTGTTTTGTTCATTTTCGGGTGTAATGGTGCTGCATCTAAATGTAAATACAACACTTTACGATCCCGGT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis