Browse Element(s) Details


OsAffx.16762.1.S1_at

Description tigr:9635.m04867
TID=OsAffx.16762.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4825010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48210Os.40360.1.S1_at9/117+28796576..28799353hypothetical protein
LOC_Os07g48210Os.40360.1.S1_x_at8/117+28796576..28799353hypothetical protein
LOC_Os07g48210Os.40855.5.S1_x_at7/117+28796576..28799353hypothetical protein
LOC_Os07g48229Os.26706.1.S1_at10/117+28807843..28818077Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os07g48250OsAffx.16762.1.S1_at10/117+28822176..28823381hypothetical protein
LOC_Os07g48260Os.11321.1.S1_at11/117+28827100..28830705WRKY DNA binding domain containing protein, expressed
LOC_Os07g48270Os.15665.1.S1_at11/117+28830923..28833032Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g48280Os.15284.1.S1_at11/117+28847181..28850637expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16762.1.S1_at--23--4131Chr07:28822256..28822280 (25 bp)
CGCAAATCTCGTCGCGTCGACTCGA
LOC_Os07g48250
OsAffx.16762.1.S1_at--799--3051Chr07:28822260..28822284 (25 bp)
AATCTCGTCGCGTCGACTCGACCTA
LOC_Os07g48250
OsAffx.16762.1.S1_at--124--471Chr07:28822261..28822285 (25 bp)
ATCTCGTCGCGTCGACTCGACCTAG
LOC_Os07g48250
OsAffx.16762.1.S1_at--75--3771Chr07:28822263..28822287 (25 bp)
CTCGTCGCGTCGACTCGACCTAGGG
LOC_Os07g48250
OsAffx.16762.1.S1_at--511--7231Chr07:28822266..28822290 (25 bp)
GTCGCGTCGACTCGACCTAGGGCAA
LOC_Os07g48250
OsAffx.16762.1.S1_at--1004--9331Chr07:28822267..28822291 (25 bp)
TCGCGTCGACTCGACCTAGGGCAAG
LOC_Os07g48250
OsAffx.16762.1.S1_at--320--4151Chr07:28822268..28822291 (24 bp)
CGCGTCGACTCGACCTAGGGCAAGA
LOC_Os07g48250
OsAffx.16762.1.S1_at--344--4011Chr07:28822270..28822291 (22 bp)
CGTCGACTCGACCTAGGGCAAGAGT
LOC_Os07g48250
OsAffx.16762.1.S1_at--1009--7211Chr07:28822271..28822291 (21 bp)
GTCGACTCGACCTAGGGCAAGAGTC
LOC_Os07g48250
OsAffx.16762.1.S1_at--673--9371NONE
TCGACCTAGGGCAAGAGTCGGTGAA
NONE
OsAffx.16762.1.S1_at--358--8211Chr07:28823325..28823345 (21 bp)
GGCAAGAGTCGGTGAAGTGAAAAAA
LOC_Os07g48250
Target Sequence 
CGCAAATCTCGTCGCGTCGACTCGACCTAGGGCAAGAGTCGGTGAAGTGAAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis