Browse Element(s) Details


Os.25298.1.S1_at

Description gb:AK103213.1
DB_XREF= gi:32988422
TID=Os.25298.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25298 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033122M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122M12, full insert sequence.
FL= gb:AK103213.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4837011/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48330OsAffx.16763.1.S1_at11/117+28880461..28884645Cytochrome P450 family protein, expressed
LOC_Os07g48340Os.14413.1.S1_at11/117+28887547..28890337Calcium-binding protein CAST, putative, expressed
LOC_Os07g48350Os.19006.1.S1_a_at11/117+28891407..28899269expressed protein
LOC_Os07g48360Os.53598.1.S1_at11/117+28899821..28906992ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os07g48370Os.25298.1.S1_at11/117+28907333..28912400Glycosyl transferase family 8 protein, expressed
LOC_Os07g48380OsAffx.16764.1.S1_at10/117+28915950..28916511hypothetical protein
LOC_Os07g48390Os.56910.1.S1_at11/117+28917891..28919370expressed protein
LOC_Os07g48390Os.56910.1.S1_s_at11/117+28917891..28919370expressed protein
LOC_Os07g48390Os.5185.1.S1_at11/117+28917891..28919370expressed protein
LOC_Os07g48400NANA7+28920580..28921861transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g48410Os.4796.1.S2_at11/117+28926985..28931273RNA recognition motif family protein, expressed
LOC_Os07g48410Os.4796.1.S1_at11/117+28926985..28931273RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25298.1.S1_at--434--7911Chr07:28911821..28911845 (25 bp)
GGTTGCTATCGTTGGTCATAAATGT
LOC_Os07g48370
Os.25298.1.S1_at--381--7631Chr07:28911935..28911959 (25 bp)
GGGACTACATGCTTTGCAGGTATTG
LOC_Os07g48370
Os.25298.1.S1_at--992--2311Chr07:28911983..28912007 (25 bp)
AAAGGTGGGTGTCAGCCTCATTGTC
LOC_Os07g48370
Os.25298.1.S1_at--175--51Chr07:28912002..28912026 (25 bp)
ATTGTCCAGATACTCGTTCTCTTGG
LOC_Os07g48370
Os.25298.1.S1_at--737--5291Chr07:28912029..28912053 (25 bp)
GAAGGCACTGTCCAGATTGTTAGAT
LOC_Os07g48370
Os.25298.1.S1_at--10--1071Chr07:28912054..28912078 (25 bp)
AGGGTATTCAACGAGCTTCGGGCTC
LOC_Os07g48370
Os.25298.1.S1_at--567--9431Chr07:28912071..28912095 (25 bp)
TCGGGCTCATGGCTGTGTTTCACGC
LOC_Os07g48370
Os.25298.1.S1_at--240--3551Chr07:28912098..28912122 (25 bp)
CATCGATTCATGACGGTTTTTCCCT
LOC_Os07g48370
Os.25298.1.S1_at--967--10391Chr07:28912204..28912228 (25 bp)
TTATCGAATTCTTCACACGGAAAGT
LOC_Os07g48370
Os.25298.1.S1_at--9--8751Chr07:28912271..28912295 (25 bp)
TGTACATTTCGACTTGTTCTTCCTC
LOC_Os07g48370
Os.25298.1.S1_at--790--6731Chr07:28912286..28912310 (25 bp)
GTTCTTCCTCACTTGGTGATTCATT
LOC_Os07g48370
Target Sequence 
GGTTGCTATCGTTGGTCATAAATGTCGGCAGAAGAGTGGACAAAGCATGTTCTATTCATTAATTGACAGGATTGATTAAC
TATTTTTTTTGCGATGGGATTAGTCTCAAATATGGGGACTACATGCTTTGCAGGTATTGATGATATGAATGAGTCTTCAA
GTAAAGGTGGGTGTCAGCCTCATTGTCCAGATACTCGTTCTCTTGGAAGAAGGCACTGTCCAGATTGTTAGATAGGGTAT
TCAACGAGCTTCGGGCTCATGGCTGTGTTTCACGCCCCATCGATTCATGACGGTTTTTCCCTTCCTCTTCTGCCAATAAG
GGTAAATATATGTAATCCTNATAGTCATTGTTTTTTGGTTNTTAGTTGTTGTACATGGATTATTTATCGAATTCTTCACA
CGGAAAGTNTGCTATTGGAAGCTTTCGACANCTCTGTGATTAACCTNTACTGTACATTTCGACTTGTTCTTCCTCACTTG
GTGATTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis