Browse Element(s) Details


Os.56910.1.S1_s_at

Description gb:AK110569.1
DB_XREF= gi:32995778
TID=Os.56910.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-D09, full insert sequence.
FL= gb:AK110569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4839011/11expressed protein
LOC_Os08g398401/11Lipoxygenase 7, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48350Os.19006.1.S1_a_at11/117+28891407..28899269expressed protein
LOC_Os07g48360Os.53598.1.S1_at11/117+28899821..28906992ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os07g48370Os.25298.1.S1_at11/117+28907333..28912400Glycosyl transferase family 8 protein, expressed
LOC_Os07g48380OsAffx.16764.1.S1_at10/117+28915950..28916511hypothetical protein
LOC_Os07g48390Os.56910.1.S1_at11/117+28917891..28919370expressed protein
LOC_Os07g48390Os.56910.1.S1_s_at11/117+28917891..28919370expressed protein
LOC_Os07g48390Os.5185.1.S1_at11/117+28917891..28919370expressed protein
LOC_Os07g48400NANA7+28920580..28921861transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g48410Os.4796.1.S2_at11/117+28926985..28931273RNA recognition motif family protein, expressed
LOC_Os07g48410Os.4796.1.S1_at11/117+28926985..28931273RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009688biological_processabscisic acid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0009507cellular_componentchloroplast
GO:0016165molecular_functionlipoxygenase activity
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56910.1.S1_s_at--290--8651Chr07:28918932..28918956 (25 bp)
TGGGCCGTCGTCGTGCAGAGGGTGC
LOC_Os07g48390
Os.56910.1.S1_s_at--737--1051Chr07:28918950..28918974 (25 bp)
AGGGTGCAAGGGTTGCCGGCTCGTT
LOC_Os07g48390
Os.56910.1.S1_s_at--1148--4252Chr07:28918965..28918989 (25 bp)
CCGGCTCGTTCAGGAGGGCAAGTTC
LOC_Os07g48390
Os.56910.1.S1_s_at--1045--5171Chr07:28918982..28919006 (25 bp)
GCAAGTTCGTGTACGAGGAGTACCC
LOC_Os07g48390
Os.56910.1.S1_s_at--572--6992Chr07:28918992..28919016 (25 bp)
GTACGAGGAGTACCCGGCGGCGAGC
LOC_Os07g48390
Os.56910.1.S1_s_at--788--4611Chr07:28919011..28919035 (25 bp)
GCGAGCGCATGTGCCGTCATGTGAT
LOC_Os07g48390
Os.56910.1.S1_s_at--195--4591Chr07:28919015..28919039 (25 bp)
GCGCATGTGCCGTCATGTGATGTGA
LOC_Os07g48390
Os.56910.1.S1_s_at--1088--8691Chr07:28919020..28919044 (25 bp)
TGTGCCGTCATGTGATGTGATCATC
LOC_Os07g48390
Os.56910.1.S1_s_at--353--791Chr07:28919029..28919053 (25 bp)
ATGTGATGTGATCATCTTCCCCTCG
LOC_Os07g48390
Os.56910.1.S1_s_at--966--3791Chr07:28919050..28919074 (25 bp)
CTCGCCGCAATGTCATCGTTGACAT
LOC_Os07g48390
Os.56910.1.S1_s_at--435--3191Chr07:28919057..28919081 (25 bp)
CAATGTCATCGTTGACATTCTCTCG
LOC_Os07g48390
Target Sequence 
TGGGCCGTCGTCGTGCAGAGGGTGCAAGGGTTGCCGGCTCGTTCAGGAGGGCAAGTTCGTGTACGAGGAGTACCCGGCGG
CGAGCGCATGTGCCGTCATGTGATGTGATCATCTTCCCCTCGCCGCAATGTCATCGTTGACATTCTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56910.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis