Browse Element(s) Details


OsAffx.28970.1.S1_x_at

Description tigr:9636.m00018
TID=OsAffx.28970.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g484403/11hypothetical protein
LOC_Os02g329602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48420OsAffx.28952.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.1.S1_x_at11/117+28955289..28959135expressed protein
LOC_Os07g48420Os.16088.2.S1_at11/117+28955289..28959135expressed protein
LOC_Os07g48430Os.26730.1.S1_at11/117+28961334..28965586Nucleoside-triphosphatase, putative, expressed
LOC_Os07g48440OsAffx.28970.4.S1_at11/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_x_at3/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.3.S1_x_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48440OsAffx.28970.1.S1_at1/117+28966181..28966771hypothetical protein
LOC_Os07g48450Os.18595.1.A1_at11/117+28984109..28986260NAC-domain containing protein 18, putative, expressed
LOC_Os07g48460Os.27926.1.A1_s_at11/117+28991039..28993144expressed protein
LOC_Os07g48460Os.12186.2.S1_x_at2/117+28991039..28993144expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009536cellular_componentplastid
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28970.1.S1_x_at--364--5812Chr05:18689613..18689637 (25 bp)
GACGCCGACGGTGATTGTTGTTACT
NONE
OsAffx.28970.1.S1_x_at--69--1934Chr05:18689620..18689644 (25 bp)
ACGGTGATTGTTGTTACTGGACTCA
NONE
OsAffx.28970.1.S1_x_at--352--8794Chr05:18689628..18689652 (25 bp)
TGTTGTTACTGGACTCAGAGTTGGT
NONE
OsAffx.28970.1.S1_x_at--405--8535Chr05:18689637..18689661 (25 bp)
TGGACTCAGAGTTGGTGTTGTTGTT
NONE
OsAffx.28970.1.S1_x_at--473--6654Chr02:19578569..19578592 (24 bp)
GTTGTTGTTGTTGAGCTCACCGTGA
NONE
OsAffx.28970.1.S1_x_at--263--6654Chr02:19578575..19578829 (25 bp)
GTTGTTGAGCTCACCGTGATCAGAT
NONE
OsAffx.28970.1.S1_x_at--29--10773Chr02:19578579..19578838 (25 bp)
TTGAGCTCACCGTGATCAGATCAAA
NONE
OsAffx.28970.1.S1_x_at--537--813Chr02:19578841..19578865 (25 bp)
ATGGTGTTTTTGTTTATCTCTTCTT
LOC_Os02g32960
OsAffx.28970.1.S1_x_at--306--10352Chr05:18689936..18689960 (25 bp)
TTTATCTCTTCTTTTGCCCTTTCGG
NONE
OsAffx.28970.1.S1_x_at--522--9734Chr05:18689971..18690051 (25 bp)
TCAAGGGAGGTTCGGTCGCCTCCGC
NONE
OsAffx.28970.1.S1_x_at--1065--1796Chr08:108229..108253 (25 bp)
ACCGCCAGCTCCTGGAGAGAGGAGA
NONE
Target Sequence 
GACGCCGACGGTGATTGTTGTTACTGGACTCAGAGTTGGTGTTGTTGTTGTTGAGCTCACCGTGATCAGATCAAAATATG
GTGTTTTTGTTTATCTCTTCTTTTGCCCTTTCGGCGATGCGGCGTCAAGGGAGGTTCGGTCGCCTCCGCCACTTCCCGCG
GCATCCACATCTCCAAGTTCTCCGTCGGCTTTCCCCGACGACGAACCGGACTCCGGCTTCTCGCCCGACGACCCGGACCT
CTTGCGCAACCGCCCCGTCCCCGACCGGCTCCTCGTCGTCTCCGCCGGCGTCGCCGCCAACCTCCTCTTCGCCTTCCTCA
TCGTCTACACCCAGGCGCTCACCGTCGGCATCCCTGTCCAGGCGCAGCTCCCCGGCGTCCTCGTCTCCGAGGTCATCCCT
GGCTCCGTCGCCGCCAGCCGGCCGGCCGCGTCGCCGAACCGCCAGCTCCTGGAGAGAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28970.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis